1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-10 21:43:09 +00:00
Commit graph

991 commits

Author SHA1 Message Date
James A. Fellows Yates
105bac7bb9
Apply suggestions from code review 2023-04-20 12:59:33 +02:00
James A. Fellows Yates
ee031ebf91
Apply suggestions from code review
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
2023-04-20 12:58:23 +02:00
James Fellows Yates
3f34603c00 Prettier 2023-04-15 12:54:07 +02:00
James Fellows Yates
ce97a1124e Add final documentation 2023-04-15 12:48:52 +02:00
James Fellows Yates
94e88d788d Everywhere account when no-runmerging for single libs 2023-04-04 18:36:37 +02:00
James Fellows Yates
e5e0aab59d More tweaks 2023-04-04 16:29:37 +02:00
James Fellows Yates
ca9c0cf8fd Further fixes 2023-04-04 15:52:23 +02:00
James Fellows Yates
6895e45768 Fix a few conditional bugs and related 2023-03-23 15:46:02 +01:00
James Fellows Yates
3b90064ba4 Start adding conditions in modules.conf - non-cat not working 2023-03-22 15:39:45 +01:00
James Fellows Yates
74bc6b7dd3 Logical ordering and improved commenting 2023-03-17 22:38:05 +01:00
James Fellows Yates
68d131af34 Remove leftover dump 2023-03-17 22:30:43 +01:00
James Fellows Yates
f9af0040bf Add multi-run meta information 2023-03-17 22:30:29 +01:00
James A. Fellows Yates
af61e007b3
Merge pull request #269 from nf-core/reduce-full-test-output
Deactivate saving of reads and other large files for full tests
2023-03-17 11:46:08 +01:00
James A. Fellows Yates
142ff2f099
Apply suggestions from code review 2023-03-17 10:26:38 +01:00
James Fellows Yates
577d270423 Deactivate saving of reads and other large files for full tests 2023-03-17 10:14:40 +01:00
James A. Fellows Yates
66a98c2bc8
Merge pull request #265 from genomic-medicine-sweden/dev
Update changelog after release
2023-03-13 12:56:40 +01:00
sofstam
1347f27c11 Update changelog after release 2023-03-13 12:21:37 +01:00
James A. Fellows Yates
eaef6ac9bc
Apply suggestions from code review 2023-03-13 10:57:36 +01:00
Sofia Stamouli
ae3ee470ee
Merge pull request #264 from sofstam/update_taxpasta_version
Updata taxpasta 0.2.3
2023-03-13 10:25:55 +01:00
Sofia Stamouli
0007c99d1c
Merge branch 'dev' into update_taxpasta_version 2023-03-13 09:38:10 +01:00
sofstam
8ecb655952 Prettier 2023-03-13 09:11:53 +01:00
sofstam
213f4e4f23 Updata taxpasta 2023-03-13 08:58:59 +01:00
James A. Fellows Yates
3c4ee927e3
Merge pull request #263 from nf-core/docs-updates
Update docs based on feedback and add missing results directories
2023-03-12 12:10:34 +01:00
James A. Fellows Yates
9550c76c25
Update README.md 2023-03-12 11:11:05 +01:00
James A. Fellows Yates
7f6e162e1c
Update docs/output.md
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
2023-03-12 11:08:37 +01:00
James A. Fellows Yates
6266ee782d
Update README.md
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
2023-03-12 11:08:31 +01:00
James Fellows Yates
95f9bf1fa9 Update credits section 2023-03-12 08:43:56 +01:00
James Fellows Yates
e49668005f Update docs based on feedback and add missing results directories 2023-03-12 08:35:45 +01:00
Moritz E. Beber
efa398edab
Merge pull request #258 from nf-core/clone-maps
refactor: double check maps and validation
2023-03-11 21:39:49 +01:00
James A. Fellows Yates
5e400c8c89
Apply suggestions from code review 2023-03-11 20:06:59 +01:00
Moritz E. Beber
bb7323e25d fix: restore setting id on FASTQ meta 2023-03-11 11:34:47 +01:00
Moritz E. Beber
7104b12e3b Update subworkflows/local/longread_preprocessing.nf
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2023-03-11 11:28:42 +01:00
Moritz E. Beber
fa1c779536 fix: insert id key again 2023-03-11 11:28:42 +01:00
Moritz E. Beber
246da8a7b0 chore: remove fixme comments 2023-03-11 11:28:42 +01:00
Moritz E. Beber
7c1133efb8 add more comments and slight style changes 2023-03-11 11:28:42 +01:00
Moritz E. Beber
5380bc18ec fix: channels should match 1:1 without remaining elements 2023-03-11 11:28:42 +01:00
Moritz E. Beber
07db3c93e2 style: use map addition instead of cloning 2023-03-11 11:28:42 +01:00
Moritz E. Beber
d17dce5590 style: use subMap and early returns 2023-03-11 11:28:42 +01:00
Moritz E. Beber
0bcea6c993 style: use parameter for branch closure 2023-03-11 11:28:42 +01:00
Moritz E. Beber
b90433f3c2 style: use parameters for filter closure 2023-03-11 11:28:42 +01:00
Moritz E. Beber
aa2410a871 style: use named parameters for closure 2023-03-11 11:28:42 +01:00
Moritz E. Beber
c2ad421051 refactor: simplify DB validation 2023-03-11 11:28:42 +01:00
Sofia Stamouli
53db964bcf
Merge pull request #260 from alexhbnr/spelling_mistake_README
Update README.md
2023-03-10 14:03:58 +01:00
Alex Hübner
f92a405554
Update README.md 2023-03-10 12:36:52 +01:00
James A. Fellows Yates
c1c4180769
Merge pull request #256 from nf-core/reduce-tests
Reduce number of tests to check just each tool option is tested
2023-03-07 15:30:06 +01:00
James A. Fellows Yates
a77517af0d
Merge pull request #255 from nf-core/config-ordering
Minor clean ups from second release review
2023-03-07 15:29:32 +01:00
James Fellows Yates
f3ac1d2a21 Update License to match nextflow.conifg [skip ci] 2023-03-07 14:01:09 +01:00
James A. Fellows Yates
6dbeb5913a
Remove left over skips 2023-03-07 13:18:58 +01:00
James A. Fellows Yates
54e8857233
Reduce number of tests to check just each tool option is tested 2023-03-07 13:06:32 +01:00
James Fellows Yates
98bc6910d5 Update authors and remove left over comment 2023-03-07 11:47:54 +01:00