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adapterremoval
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chore: update adapterremoval
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2022-04-05 10:18:34 +02:00 |
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bbmap/bbduk
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Add bbduk complexity (entropy-based) filtering
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2022-04-02 17:02:05 +02:00 |
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bowtie2
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Start work on host removal
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2022-04-03 07:58:40 +02:00 |
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cat/fastq
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Get skeleton read processing to input for profiling
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2022-02-18 16:51:01 +01:00 |
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centrifuge
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Add centrifuge kreport in taxprofiler
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2022-04-22 15:24:10 +02:00 |
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custom/dumpsoftwareversions
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Template update for nf-core/tools version 2.3.1
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2022-03-23 13:57:56 +00:00 |
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diamond/blastx
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Add working output for Kraken2/Centrifuge/DIAMOND
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2022-05-07 05:22:35 +02:00 |
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fastp
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Get skeleton read processing to input for profiling
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2022-02-18 16:51:01 +01:00 |
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fastqc
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Template update for nf-core/tools version 2.3.1
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2022-03-23 13:57:56 +00:00 |
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filtlong
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Update the dev branch with the filtlong update
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2022-07-12 17:15:36 +02:00 |
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gunzip
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Add support for MALT display in Krona, tweaks other krona modules to dispaly tool name in output file
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2022-06-30 18:33:11 +02:00 |
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kaiju
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Install KAIJU_KAIJU2KRONA
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2022-06-27 08:58:28 -05:00 |
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kraken2/kraken2
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Add working output for Kraken2/Centrifuge/DIAMOND
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2022-05-07 05:22:35 +02:00 |
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krakentools/kreport2krona
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Install KRAKENTOOLS_KREPORT2KRONA module
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2022-06-14 08:13:36 -05:00 |
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krona
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Get fixed Krona module and add Krona taxonomy to test profile
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2022-07-01 17:21:19 +02:00 |
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malt/run
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Roll back MALT version
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2022-06-20 08:23:14 +02:00 |
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megan/rma2info
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Start work
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2022-04-13 11:49:35 +02:00 |
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metaphlan3
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Add modules
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2022-05-03 09:28:46 +02:00 |
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minimap2
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Add modules
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2022-05-03 09:28:46 +02:00 |
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motus
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Merge branch 'dev' into motus/merge
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2022-07-15 10:52:42 +02:00 |
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multiqc
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Template update for nf-core/tools version 2.3.1
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2022-03-23 13:57:56 +00:00 |
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porechop
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Add emitting porechop logs to multiqc and fix collection of others
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2022-07-19 13:50:39 +02:00 |
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prinseqplusplus
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Add prinseq as alternative complexity filtering
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2022-04-04 21:16:51 +02:00 |
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samtools
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Update samtools/bam2fq
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2022-05-05 08:38:41 +02:00 |
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untar
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Adds PoC of untarring system
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2022-03-21 14:58:19 +00:00 |
