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taxprofiler/modules/nf-core/modules
2022-07-19 13:50:28 +02:00
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adapterremoval chore: update adapterremoval 2022-04-05 10:18:34 +02:00
bbmap/bbduk Add bbduk complexity (entropy-based) filtering 2022-04-02 17:02:05 +02:00
bowtie2 Start work on host removal 2022-04-03 07:58:40 +02:00
cat/fastq Get skeleton read processing to input for profiling 2022-02-18 16:51:01 +01:00
centrifuge Add centrifuge kreport in taxprofiler 2022-04-22 15:24:10 +02:00
custom/dumpsoftwareversions Template update for nf-core/tools version 2.3.1 2022-03-23 13:57:56 +00:00
diamond/blastx Add working output for Kraken2/Centrifuge/DIAMOND 2022-05-07 05:22:35 +02:00
fastp Get skeleton read processing to input for profiling 2022-02-18 16:51:01 +01:00
fastqc Template update for nf-core/tools version 2.3.1 2022-03-23 13:57:56 +00:00
filtlong Update the dev branch with the filtlong update 2022-07-12 17:15:36 +02:00
gunzip Add support for MALT display in Krona, tweaks other krona modules to dispaly tool name in output file 2022-06-30 18:33:11 +02:00
kaiju Install KAIJU_KAIJU2KRONA 2022-06-27 08:58:28 -05:00
kraken2/kraken2 Add working output for Kraken2/Centrifuge/DIAMOND 2022-05-07 05:22:35 +02:00
krakentools/kreport2krona Install KRAKENTOOLS_KREPORT2KRONA module 2022-06-14 08:13:36 -05:00
krona Get fixed Krona module and add Krona taxonomy to test profile 2022-07-01 17:21:19 +02:00
malt/run Roll back MALT version 2022-06-20 08:23:14 +02:00
megan/rma2info Start work 2022-04-13 11:49:35 +02:00
metaphlan3 Add modules 2022-05-03 09:28:46 +02:00
minimap2 Add modules 2022-05-03 09:28:46 +02:00
motus Merge branch 'dev' into motus/merge 2022-07-15 10:52:42 +02:00
multiqc Template update for nf-core/tools version 2.3.1 2022-03-23 13:57:56 +00:00
porechop Add Porechop module 2022-03-18 14:34:10 +01:00
prinseqplusplus Add prinseq as alternative complexity filtering 2022-04-04 21:16:51 +02:00
samtools Update samtools/bam2fq 2022-05-05 08:38:41 +02:00
untar Adds PoC of untarring system 2022-03-21 14:58:19 +00:00