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134 commits 3 branches 4 tags 440 KiB
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Author SHA1 Message Date
Thomas A. Christensen II
d4bb72c458
Revamp fixed-effect algorithm 2021-08-31 19:24:07 -05:00
Thomas A. Christensen II
4b66ad8b1f
Make column names more robust 2021-08-31 18:27:16 -05:00
Thomas A. Christensen II
91fc553c4c
Fix documentation syntax bugs 2021-08-29 08:08:23 -05:00
Thomas A. Christensen II
16aae0469e
Fix tests 2021-08-28 19:28:25 -05:00
Thomas A. Christensen II
97bd43323d
Convert wiki to docs 2021-08-28 19:25:17 -05:00
Thomas A. Christensen II
b4e0591ed2
Update badges to work on 'develop' branch 2021-08-28 18:11:20 -05:00
Thomas A. Christensen II
a9ab1e8641
Push pedigree matrix to its own function 2021-08-28 18:07:22 -05:00
Thomas A. Christensen II
3782de85ac
Mark beefblup CLI as Julia file 2021-08-09 21:06:21 -05:00
Thomas A. Christensen II
9036ace524
Remove uneeded test script file 2021-08-09 21:02:20 -05:00
Thomas A. Christensen II
c318ded0a6
Make Julia version correct in docs CI 2021-08-09 20:47:26 -05:00
Thomas A. Christensen II
74f15be400
New documentation CI approach 2021-08-09 20:46:18 -05:00
Thomas A. Christensen II
091b757b00
Add headless display server to CI 2021-08-09 19:57:32 -05:00
Thomas A. Christensen II
a1d4e6b063
Fix documentation CI 2021-08-09 19:31:25 -05:00
Thomas A. Christensen II
79e158d83e
Merge tag 'v0.2.2' into develop 
New methods for making GitHub recognize beefblup as a Julia program
 2021-08-09 19:11:52 -05:00
Thomas A. Christensen II
94a2e2e124 Merge branch 'hotfix/v0.2.2' 
Last GitHub fix didn't take
 2021-08-09 19:10:04 -05:00
Thomas A. Christensen II
f7f09cec90
Declare beefblup.jl as Julia using Emacs modeline 2021-08-09 19:09:45 -05:00
Thomas A. Christensen II
12e95d4a7a
Declare all jl files as Julia regardless of shebang 2021-08-09 19:09:28 -05:00
Thomas A. Christensen II
7b7ab22123
Bump version number 2021-08-09 19:08:42 -05:00
Thomas A. Christensen II
cc97c99a68 Merge tag 'v0.2.1' into develop 
Fix GitHub's language detection
 2021-08-09 19:00:35 -05:00
Thomas A. Christensen II
a6bd3d7a29 Merge branch 'hotfix/v0.2.1' 
Fix GitHub's language-detection for beefblup
 2021-08-09 18:59:50 -05:00
Thomas A. Christensen II
489274d557
Bump version number 2021-08-09 18:59:09 -05:00
Thomas A. Christensen II
66fc4b902f
Mark beefblup as Julia on GitHub 2021-08-09 18:57:09 -05:00
Thomas A. Christensen II
5e1c5f7707 Merge branch 'master' into develop 
CI from GitHub workflows must be performed in 'master' branch, even
though the work most directly affected the 'develop' branch.
 2021-08-09 18:33:30 -05:00
Thomas A. Christensen II
27199ea748
Update Documentation.yml 2021-07-07 09:47:05 -05:00
Thomas A. Christensen II
e18afb68df
Update Documentation.yml 2021-07-07 09:46:08 -05:00
Thomas A. Christensen II
3f55072ecd
Fix type 2021-07-07 09:43:57 -05:00
Thomas A. Christensen II
15bdebb17d
Create Documentation.yml 2021-07-07 09:42:20 -05:00
Thomas A. Christensen II
d87ee85795
Set docs to correct place [ci skip] 2021-07-07 09:35:40 -05:00
Thomas A. Christensen II
b3162345ff
Make docs point to this repository 2021-07-07 09:33:10 -05:00
Thomas A. Christensen II
c3d905ff5e
More Travis GUI updates 2021-06-19 20:56:14 -05:00
Thomas A. Christensen II
615766901c
Try adding GUI to Travis config 
https://stackoverflow.com/a/37330054/3922521
 2021-06-19 20:34:51 -05:00
Thomas A. Christensen II
d9fde2af8f
Enable TravisCI 2021-06-19 20:15:40 -05:00
Thomas A. Christensen II
141cf56b07
Add basic test for correct fixed effect matrix 2021-06-19 20:11:25 -05:00
Thomas A. Christensen II
181819db28
Refactor fixed effect solver into its own function 2021-06-19 19:56:32 -05:00
Thomas A. Christensen II
f5f1dfad13
Remove reference to blue coding style 2021-06-19 19:28:05 -05:00
Thomas A. Christensen II
7ce74be4d4
Merge branch 'pkg-template' into develop 2021-06-19 19:24:46 -05:00
Thomas A. Christensen II
0a537f9928
Run Julia template engine for CI purposes 2021-06-19 19:16:34 -05:00
Thomas A. Christensen II
95fd34ce3a
Bootstrap testing framework 2021-06-19 18:49:00 -05:00
Thomas A. Christensen II
93564b247e
Reformat document 2021-06-19 18:27:52 -05:00
Thomas A. Christensen II
289984be2f
Fix running without arguments 2021-06-19 16:13:07 -05:00
Thomas A. Christensen II
6e311141ac
Create debug config 2021-06-19 11:54:51 -05:00
Thomas A. Christensen II
fa42f3635f
Remove debug info from cli 2021-06-19 11:54:34 -05:00
Thomas A. Christensen II
5c5ac1654c
Add argument parsing to cli 2021-06-19 11:50:26 -05:00
Thomas A. Christensen II
1885aa15ef
Fix results file name creation 2021-06-19 11:50:02 -05:00
Thomas A. Christensen II
530258a2c8
Qualify column deletion function 2021-06-19 11:07:13 -05:00
Thomas A. Christensen II
9b181d251c
Update deprecated column deletion syntax 2021-06-19 11:05:02 -05:00
Thomas A. Christensen II
610c80e7c9
Use Julia error/warn systems instead of printing to stdout 2021-06-19 10:01:51 -05:00
Thomas A. Christensen II
f985f4a700
Remove verbose text output 2021-06-18 15:27:18 -05:00
Thomas A. Christensen II
7cf650992d
Add results filename assumption 2021-06-18 15:25:34 -05:00
Thomas A. Christensen II
5048d3a1b8
Split into input and worker functions 2021-06-18 14:13:28 -05:00