Gwenna Breton
|
4538e8aa36
|
Update medair.config
- added path to singularity image for Sentieon
- harmonized alignment
|
2 years ago |
|
Gwenna Breton
|
746db14d47
|
Update medair.md
- updated text about storing singularity images
- updated text about using profiles
|
2 years ago |
|
qlr900
|
d19d6c0ae0
|
update wording
|
2 years ago |
|
qlr900
|
d2b6b07de8
|
remove comments for mnaseseq
|
2 years ago |
|
Gwennid
|
b6e2d03a02
|
Added Singularity cache dir
|
2 years ago |
|
qlr900
|
4f98876429
|
add export to NXF_SINGULARITY_CACHEDIR
|
2 years ago |
|
qlr900
|
6939c6f003
|
lower queueSize to 5
|
2 years ago |
|
qlr900
|
f45b8645f6
|
update wording
|
2 years ago |
|
qlr900
|
8a781b6bb2
|
modify alternative module load
|
2 years ago |
|
qlr900
|
7ac08a1015
|
add alternative module load
|
2 years ago |
|
qlr900
|
49e756d1bc
|
fix typos
|
2 years ago |
|
Gwennid
|
96fd2bf217
|
Fixed formatting
|
2 years ago |
|
Gwenna Breton
|
1d13dd9fbc
|
Changed where cgg-it is mentioned
|
2 years ago |
|
Gwenna Breton
|
235097e58e
|
Addressed review comments
- removed mention of iGenomes
- clarified whom to contact for support
|
2 years ago |
|
Gwenna Breton
|
1d7a34b11f
|
Removed comment about internal doc
|
2 years ago |
|
Gwenna Breton
|
b202ad70ac
|
Removed mention of specific module versions
|
2 years ago |
|
qlr900
|
56026c5ac4
|
remove beforeScript
|
2 years ago |
|
qlr900
|
7d59eabd91
|
simplify guideline
|
2 years ago |
|
qlr900
|
941a34406a
|
update ku_sund_dangpu.md
|
2 years ago |
|
qlr900
|
8ba35f721c
|
add ku_sund_dangpu.md
|
2 years ago |
|
qlr900
|
65d7080921
|
add conf/ku_sund_dangpu.config
|
2 years ago |
|
James A. Fellows Yates
|
08435ca300
|
Merge pull request #382 from jfy133/eva-java-correction
EAGER @ EVA Further Java workarounds
|
2 years ago |
|
James A. Fellows Yates
|
a141ff626b
|
Merge branch 'master' into eva-java-correction
|
2 years ago |
|
Gwenna Breton
|
b3a6e199ca
|
Merge branch 'nf-core:master' into medair
|
2 years ago |
|
Maxime U. Garcia
|
49e779e337
|
Merge pull request #394 from nvnieuwk/vsc-ugent-fix
Vsc ugent fix for job-intensive pipelines
|
2 years ago |
|
Nicolas Vannieuwkerke
|
8a74c517d4
|
Merge branch 'vsc-ugent-fix' of github.com:nvnieuwk/configs into vsc-ugent-fix
|
2 years ago |
|
Nicolas Vannieuwkerke
|
1e34595280
|
removed queue size limit
|
2 years ago |
|
nvnieuwk
|
5ff845cde7
|
Merge branch 'master' into vsc-ugent-fix
|
2 years ago |
|
Nicolas Vannieuwkerke
|
fa949a069e
|
added queuesize
|
2 years ago |
|
Nicolas Vannieuwkerke
|
abfa3f47f4
|
lowered the job submit rate of vsc_ugent
|
2 years ago |
|
Gwenna Breton
|
84174043e4
|
Added details for nf-core pipelines download
|
2 years ago |
|
Gwenna Breton
|
2398110ea5
|
Added info on dowloading pipelines
|
2 years ago |
|
Gwenna Breton
|
22f73b06f9
|
Updated info about the different profiles
|
2 years ago |
|
Gwenna Breton
|
77dba3256a
|
Add profile name to test scope
|
2 years ago |
|
Gwenna Breton
|
abccece8a3
|
Added medair config file to the list
|
2 years ago |
|
Gwenna Breton
|
77017e877a
|
Added medair configuration docs to the list
|
2 years ago |
|
Gwenna Breton
|
f718025e79
|
Added doc file for medair
|
2 years ago |
|
Gwenna Breton
|
bb35d8e5d1
|
Added conf file for medair
|
2 years ago |
|
Maxime U. Garcia
|
23669d2df6
|
Merge pull request #393 from Sage-Bionetworks-Workflows/bgrande/sage-sarek-config
Include `check_max()` definition for Sage configuration
|
2 years ago |
|
Bruno Grande
|
6f0d9e6c43
|
Complete `check_max()` move to global config
|
2 years ago |
|
Bruno Grande
|
a19d79f6ff
|
Move `check_max()` to global config
|
2 years ago |
|
Bruno Grande
|
1c7230cb08
|
Add Sage-specific Sarek config
|
2 years ago |
|
Phil Ewels
|
1730751d97
|
Merge pull request #389 from Sage-Bionetworks-Workflows/bgrande/sage-config
[WIP] Add custom configuration for Sage Bionetworks
|
2 years ago |
|
Bruno Grande
|
37121faf4a
|
Fix typoe with label name
|
2 years ago |
|
Bruno Grande
|
ecd898584d
|
Handle Sarek-specific `max` labels
|
2 years ago |
|
Bruno Grande
|
c7093dee13
|
Reduce max_memory to fit on an instance
|
2 years ago |
|
James A. Fellows Yates
|
51d057564f
|
Fix python related seg faults mag@eva
|
2 years ago |
|
James Fellows Yates
|
ba8bffbdfd
|
Use env scope instead of beforescript for mag@eva
|
2 years ago |
|
James Fellows Yates
|
d12d98fb2e
|
Merge branches 'master' and 'eva-java-correction' of github.com:jfy133/nf-core-configs into master
|
2 years ago |
|
James Fellows Yates
|
acabcbd9e8
|
Use _JAVA_OPTIONS instead
|
2 years ago |