James A. Fellows Yates
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ec638e62de
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Apply suggestions from code review
Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
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2 years ago |
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James A. Fellows Yates
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b8751af6c6
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Update conf/pipeline/mag/eva.config
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2 years ago |
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James Fellows Yates
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c0effc0366
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Add HKI profile files
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2 years ago |
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James A. Fellows Yates
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8ea01e2041
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Merge branch 'nf-core:master' into master
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2 years ago |
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James A. Fellows Yates
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3fcf708134
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Merge pull request #414 from sheffield-bioinformatics-core/sbc_sharc
Added global institutional and pipeline configs for sbc_sharc
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2 years ago |
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Maxime U. Garcia
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326ab0036e
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Merge pull request #415 from Sage-Bionetworks-Workflows/bgrande/sage-tweaks
Adjust AWS-related configuration to improve reliability
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2 years ago |
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lquayle88
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be356eb400
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Ran prettier on docs/sbc_sharc.md
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2 years ago |
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ameynert
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9167e81214
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Added other Java processes with memory overhead, sorted alphabetically
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2 years ago |
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lquayle88
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32403b6222
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Updated pipeline config docs for atacseq, chipseq and rnaseq
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2 years ago |
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lquayle88
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91bfa7341f
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Made changes requested for PR
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2 years ago |
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Bruno Grande
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3d3ee391be
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Limit the number of parallel transfers
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2 years ago |
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Lewis Quayle
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61ae463606
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Updated sbc_sharc.md
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2 years ago |
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lquayle88
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9fef35d7d3
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Updated pipeline configs for atacseq and chipseq
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2 years ago |
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lquayle88
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a9b62c53e0
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Added global institutional and pipeline configs for sbc_sharc
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2 years ago |
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ameynert
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91ef9a3241
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Added another Java process with overhead
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2 years ago |
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Bruno Grande
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abae5c4bd8
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Decrease AWS Batch queue size
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2 years ago |
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ameynert
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a808933da8
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Added another Java process that needs memory overhead
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2 years ago |
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ameynert
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29a0b30d85
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Updated process names to Sarek 3
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2 years ago |
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ameynert
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d84754d328
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Merge pull request #5 from nf-core/master
Merge in from base repository
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2 years ago |
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phue
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b20f28a3c9
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biohpc_gen: load charliecloud from lrz software tree and remove conda fallback
the biohpc_gen specific software tree is less maintained and outdated
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2 years ago |
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Bruno Grande
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47fa890ad7
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Merge pull request #407 from Sage-Bionetworks-Workflows/bgrande/sage-aws
Improve AWS-related config for Sage profile
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2 years ago |
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Bruno Grande
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80831358f9
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Merge branch 'master' into bgrande/sage-aws
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2 years ago |
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Lara Ianov
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8448bb9a1e
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re-define TMPDIR
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2 years ago |
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Simon Pearce
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6b83603325
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Merge pull request #400 from SPPearce/crukmi
Cancer Research UK Manchester Institute config
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2 years ago |
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SPearce
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a142ad7eae
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Added link to Sarek specific documentation
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2 years ago |
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SPearce
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5981b643c5
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Updated the sarek pipeline config
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2 years ago |
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Simon Pearce
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2c738cae33
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Update crukmi.config
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2 years ago |
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Simon Pearce
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a8faeda141
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Update crukmi.config
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2 years ago |
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SPearce
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800931bff2
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Add Sarek specific config
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2 years ago |
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Simon Pearce
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ba1d3f24cc
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Update crukmi.config
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2 years ago |
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Simon Pearce
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897d0a188b
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Update nfcore_custom.config
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
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2 years ago |
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Simon Pearce
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df685f4f0f
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Merge branch 'master' into crukmi
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2 years ago |
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James A. Fellows Yates
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3664b4812d
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Merge pull request #411 from nf-core/docs-improvement
Add documentation for when you need to use an environmental variable
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2 years ago |
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Simon Pearce
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81768e16a9
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Merge branch 'nf-core:master' into crukmi
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2 years ago |
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James A. Fellows Yates
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5769927bbc
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Merge branch 'master' into docs-improvement
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2 years ago |
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Maxime U. Garcia
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ebcc3d278f
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Merge pull request #410 from nf-core/chear-var-fix
Fix cheaha config due to use of environmental variable
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2 years ago |
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James Fellows Yates
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51f0359b3d
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Add documentation for when you need to use an environmental variable
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2 years ago |
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Simon Pearce
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14a97ad0e8
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Merge branch 'master' into crukmi
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2 years ago |
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James Fellows Yates
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b22e8b79c7
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Fix cheaha config due to use of environmental variable
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2 years ago |
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ameynert
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69468e7ca7
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Merge pull request #409 from kalayaneech/master
A new profile for adcra [KMUTT]
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2 years ago |
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ameynert
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28e59e38b4
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Run prettier
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2 years ago |
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Kalayanee Chairat
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8e275182ea
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Update main.yml
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2 years ago |
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Kalayanee Chairat
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bf2ab39ea0
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Update README.md
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2 years ago |
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Kalayanee Chairat
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9681716205
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Update adcra.config
Fixing typo
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2 years ago |
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Kalayanee Chairat
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700f14d828
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Merge pull request #1 from nf-core/master
Merging from master
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2 years ago |
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Simon Pearce
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864da0b5be
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Merge branch 'master' into crukmi
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2 years ago |
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Bruno Grande
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9a37404a04
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Merge branch 'master' into bgrande/sage-aws
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2 years ago |
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Bruno Grande
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179b343bd2
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Incorporate resource limits
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2 years ago |
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Bruno Grande
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c883723559
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Simplify resource adjustments
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2 years ago |
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SPearce
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1e1ca1e96b
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Incorporating executor options
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2 years ago |