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Author SHA1 Message Date
Olga Botvinnik
069963ff8a Make czbiohub_aws_highpriority only set the AWS Batch queue and nothing else 2019-07-03 16:01:47 -07:00
Olga Botvinnik
917ec0863d add default trimming 2019-07-03 16:01:03 -07:00
Olga Botvinnik
6a2d2003f0 Add high priority AWS batch queue to CZBiohub AWS 2019-07-01 09:25:46 -07:00
Olga Botvinnik
70b5205d15 Add human salmon index and mouse star index 2019-06-27 15:02:47 -07:00
Olga Botvinnik
d1983f8acd Use new and improved GENCODE+ERCC annotation 2019-06-26 17:56:26 -07:00
Olga Botvinnik
cfcb533b95 Add czbiohub_aws to list of configs" 2019-06-25 19:02:49 -07:00
Olga Botvinnik
b82d68c009 Add docs 2019-06-24 17:55:01 -07:00
Olga Botvinnik
b0c67e0a9b Add both seqCenter and seq_center 2019-06-24 17:52:10 -07:00
Olga Botvinnik
acad9ac7e5 Try to clean up czb update 2019-06-24 17:50:36 -07:00
Phil Ewels
009e8f52e3
Merge pull request #37 from KochTobi/patch-1 
Update cfc config
 2019-03-16 16:26:46 +01:00
KochTobi
aaa7be049a
Update cfc config 
* Change singularity version documentation
 2019-03-16 14:11:59 +01:00
Phil Ewels
2e9a8642c0
Merge pull request #32 from phue/update-mendel-documentation 
MENDEL: remove singularity support
 2019-03-14 15:04:39 +01:00
phue
13df59bfaf remove singularity support 
reasons:

* the kernel running on the compute nodes does not support overlayfs und thus containers downloaded from
  public registries won't run because they lack the /lustre mountpoint

* building containers manually using the Singularity file would work, however nf-core pipelines will stop
  providing these files in future releases
 2019-03-12 17:57:31 +00:00
Phil Ewels
1e2c0c3e04
Merge pull request #29 from apeltzer/master 
iGenomes Rollout on "Binac" too
 2019-03-11 18:26:19 +01:00
Alexander Peltzer
68b759d6ef Mini Update 2019-03-11 18:12:35 +01:00
Alexander Peltzer
f4f3c4e53b Roll out binac too 2019-03-11 14:29:42 +01:00
Alexander Peltzer
880adfbb98
Merge pull request #28 from nf-core/ewels-patch-1 
Remove incorrect comment in code example
 2019-03-08 17:05:56 +01:00
Phil Ewels
ef1aeafef6
Remove incorrect comment in code example 2019-03-08 16:41:47 +01:00
Phil Ewels
ceecc15ac8
Merge pull request #27 from apeltzer/master 
Add the TravisCI badge as we have tests now
 2019-03-08 16:38:15 +01:00
Alexander Peltzer
c8c150d67c Add the TravisCI badge as we have tests now 2019-03-08 13:39:25 +01:00
Phil Ewels
a2fa9d3f01
Merge pull request #24 from nf-core/dev 
Include config integration test
 2019-03-08 12:36:27 +01:00
Sven Fillinger
ba3d221af6 Corrects regex 2019-03-08 12:23:27 +01:00
Sven Fillinger
bbe0d30462 Fixes syntax error in travis script 2019-03-08 12:00:43 +01:00
Sven Fillinger
d4cd9b1f0a Corrects profile grep 2019-03-08 11:58:37 +01:00
Sven Fillinger
e401769698 Corrects NXF command line call 2019-03-08 10:54:41 +01:00
Sven Fillinger
7962f7d756 Iterates over profiles and calls Nextflow 2019-03-08 10:52:09 +01:00
Sven Fillinger
1dc523d726 Removes test config 2019-03-08 10:37:27 +01:00
Sven Fillinger
4d43077ddf Adds simple NXF config script 2019-03-08 10:36:03 +01:00
Alexander Peltzer
a4acbc3a10
Merge pull request #26 from apeltzer/master 
Rolling out iGenomes now
 2019-03-07 16:15:26 +01:00
Alexander Peltzer
6b21538062 Rolling out iGenomes now 2019-03-07 16:12:30 +01:00
Sven F
4e1cb46dc5
Update nfcore_custom.config 2019-03-06 20:22:45 +01:00
Sven F
da1b4572d3
Update .travis.yml 2019-03-06 20:11:20 +01:00
Sven F
23c05308de
Merge branch 'master' into dev 2019-03-06 19:54:32 +01:00
Sven F
af81005563
Uses dev branch for now 2019-03-06 19:51:03 +01:00
Harshil Patel
91d1456746
Merge pull request #25 from drpatelh/master 
Added conf folder to paths
 2019-03-06 18:43:46 +00:00
drpatelh
53d56310bb Added conf folder to paths 2019-03-06 18:14:45 +00:00
Sven F
dcc2680ad5
Uses checked out config version 2019-03-06 18:32:14 +01:00
Sven F
5395156d22
Merge pull request #23 from sven1103/master 
Adds profile integration tests
 2019-03-06 18:24:48 +01:00
Sven Fillinger
fe9d85b23c Fixes unresolved var 2019-03-06 18:20:56 +01:00
Sven Fillinger
7ec2532b78 Points config version to current branch 2019-03-06 17:58:43 +01:00
Sven Fillinger
638f986f34 Adds profile integration tests 2019-03-06 17:42:14 +01:00
Harshil Patel
6370484894
Merge pull request #22 from ewels/master 
Hotfix for breaking pipelines that don't already support params.custom_config_base
 2019-03-06 16:09:02 +00:00
Phil Ewels
6daf76f47d Hotfix for breaking pipelines that don't already support params.custom_config_base 2019-03-06 17:03:13 +01:00
Alexander Peltzer
a2f5522396
Merge pull request #19 from apeltzer/make_elvis_great_again 
Provide fix for online issues
 2019-03-06 13:16:31 +01:00
Sven F
ad47005fb6
Update nfcore_custom.config 
Co-Authored-By: apeltzer <apeltzer@users.noreply.github.com>
 2019-03-06 13:13:52 +01:00
Alexander Peltzer
20deaf3b46 Provide fix for online issues 2019-03-06 12:59:54 +01:00
Alexander Peltzer
8ebcfa26a9
Update nfcore_custom.config 
Fix mini typo
 2019-03-06 08:21:34 +01:00
Phil Ewels
c39b4589dd
Merge pull request #17 from ewels/master 
Added support for new params.custom_config_base option
 2019-03-05 16:56:13 +01:00
Phil Ewels
d115909343 Tyop 2019-03-05 16:53:59 +01:00
Phil Ewels
e0ba8e6f07 Tweak the readme 2019-03-05 16:28:10 +01:00