Annick Renevey
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0851903f66
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include new config in pipeline configs file
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2022-08-31 14:19:07 +02:00 |
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Annick Renevey
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51871ea6fc
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rnafusion setup for hasta usage
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2022-08-31 11:32:01 +02:00 |
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Lara Ianov
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08b62ede83
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Merge pull request #404 from nf-core/cheaha_singularity_update
Cheaha Config Update
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2022-08-30 14:45:50 -05:00 |
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Austyn Trull
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90f638d376
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Updating the cheaha documentation to clarify that /data/temporary-scratch/atrull will be used as storage for files that would normally go into one of the temporary locations when using Singularity
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2022-08-29 10:47:46 -05:00 |
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James A. Fellows Yates
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b33aef1431
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Merge pull request #386 from andrewfrank/patch-2
Update google.config to fix custom VM memory error
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2022-08-29 08:30:39 +02:00 |
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James A. Fellows Yates
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c70a95f9c9
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Merge branch 'master' into patch-2
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2022-08-29 08:23:31 +02:00 |
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Harshil Patel
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84b0b705a2
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Merge pull request #405 from drpatelh/monkeypox
Replace NC_063383.1 fasta and gff and add Nextclade config
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2022-08-25 12:57:43 +01:00 |
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Harshil Patel
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8b9661825b
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Replace NC_063383.1 fasta and gff and add Nextclade config
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2022-08-24 15:21:44 +01:00 |
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Harshil Patel
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d71e31c378
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Merge pull request #403 from drpatelh/monkeypox
Add monkeypox genome files to viralrecon genome config file
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2022-08-24 12:16:21 +01:00 |
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Harshil Patel
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8dcfcfd856
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Add monkeypox genome files to viralrecon genome config file
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2022-08-24 12:13:17 +01:00 |
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Austyn Trull
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8d5ae4c3ab
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Committing changes made by Brandon Wilk so that singularity containers will use scratch space
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2022-08-23 15:30:13 -05:00 |
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Ramprasad Neethiraj
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49c71e0c28
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Merge pull request #363 from ramprasadn/feat/hasta_update
Add a profile for stubruns in hasta
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2022-08-23 22:14:18 +02:00 |
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Ramprasad Neethiraj
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9182b55acc
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Merge branch 'master' into feat/hasta_update
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2022-08-23 11:21:58 +02:00 |
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Anders Jemt
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9c26cfddaa
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Merge pull request #390 from raysloks/feat/hasta_java_memory_fix
Feat/hasta java memory fix
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2022-08-22 15:46:39 +02:00 |
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Ramprasad Neethiraj
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7ff2977a29
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Merge branch 'master' of github.com:nf-core/configs into feat/hasta_update
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2022-08-18 15:58:56 +02:00 |
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Ramprasad Neethiraj
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dd63dee7aa
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update conf
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2022-08-18 15:56:41 +02:00 |
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Ramprasad Neethiraj
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1c942759ea
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update sentieon
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2022-08-18 15:52:31 +02:00 |
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Ramprasad Neethiraj
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a6cce4ab6a
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Merge branch 'master' into feat/hasta_java_memory_fix
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2022-08-18 13:36:08 +02:00 |
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Phil Ewels
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ea89504bc7
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Merge pull request #397 from ErikDanielsson/add-citation-cff
Add `CITATION.cff` for the nf-core publication
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2022-08-18 09:27:08 +02:00 |
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Gwenna Breton
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99df08f409
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Merge pull request #395 from ClinicalGenomicsGBG/medair
New config: Add config for Medair
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2022-08-09 11:03:56 +02:00 |
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Gwenna Breton
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0e4f2b40d3
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Added email of IT group
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2022-08-08 16:14:17 +02:00 |
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Gwenna Breton
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ffefefe0ab
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Added contact emails
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2022-08-08 16:11:55 +02:00 |
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Gwenna Breton
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2740b5efbf
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Update docs/medair.md
Fixed typo
Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
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2022-08-08 16:08:05 +02:00 |
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Gwenna Breton
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648025c1ce
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Clarified where to store singularity images
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2022-08-08 16:04:21 +02:00 |
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Gwenna Breton
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6aa78833c3
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Merge branch 'master' into medair
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2022-08-01 16:46:55 +02:00 |
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James A. Fellows Yates
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0b47849532
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Update mpcdf.config
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2022-07-27 14:23:29 +02:00 |
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Alexander Peltzer
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36487c8c25
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Merge pull request #399 from nf-core/sanger
Sanger
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2022-07-20 16:51:46 +02:00 |
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Matthieu Muffato
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dda1d810b1
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Latest stable version (rather than an edge one)
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2022-07-20 14:35:39 +01:00 |
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Matthieu Muffato
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1ee20f0bb0
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2 cores should be enough for the nextflow manager itself
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2022-07-20 14:35:22 +01:00 |
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Matthieu Muffato
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60dc451569
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The oversubscribed queue is recommended for workflow managers
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2022-07-20 14:34:59 +01:00 |
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Matthieu Muffato
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1f1a9ac5f0
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ISG provide the module, not the pathogen informatics team
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2022-07-20 14:34:25 +01:00 |
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Matthieu Muffato
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2aad355fbf
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The config doesn't mandate Singularity any more (Conda is fine too)
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2022-07-20 14:32:43 +01:00 |
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Priyanka Surana
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fd87fbcb9d
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Sanger profile update
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2022-07-20 13:22:51 +01:00 |
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Priyanka Surana
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58508c4fbc
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Sanger profile update
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2022-07-20 13:14:42 +01:00 |
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Maxime U. Garcia
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a02bd46617
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Merge pull request #398 from nvnieuwk/lower-submission-rate-for-vsc_ugent
lower submission rate for vsc_ugent
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2022-07-14 16:03:46 +02:00 |
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Nicolas Vannieuwkerke
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f40825ac14
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lower submission rate for vsc_ugent
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2022-07-14 15:50:50 +02:00 |
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Alexander Peltzer
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c6d59bf633
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Merge pull request #396 from drpatelh/nextclade
Update default Nextclade dataset to 2022-06-14T12:00:00Z
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2022-07-12 10:19:15 +02:00 |
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Erik Danielsson
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5d7789792f
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Add CITATION.cff and update .editorconfig
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2022-07-12 09:57:20 +02:00 |
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Harshil Patel
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2ab126fa4d
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Update default Nextclade dataset to 2022-06-14T12:00:00Z
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2022-07-11 18:28:41 +01:00 |
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Gwenna Breton
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6b9cdc8ef3
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Added info about Sentieon singularities
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2022-07-07 14:24:15 +02:00 |
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Gwenna Breton
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4538e8aa36
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Update medair.config
- added path to singularity image for Sentieon
- harmonized alignment
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2022-07-07 13:41:42 +02:00 |
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Gwenna Breton
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746db14d47
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Update medair.md
- updated text about storing singularity images
- updated text about using profiles
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2022-07-07 11:42:46 +02:00 |
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Gwennid
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b6e2d03a02
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Added Singularity cache dir
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2022-07-06 13:59:35 +02:00 |
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Gwennid
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96fd2bf217
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Fixed formatting
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2022-07-06 11:42:05 +02:00 |
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Gwenna Breton
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1d13dd9fbc
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Changed where cgg-it is mentioned
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2022-07-06 11:24:03 +02:00 |
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Gwenna Breton
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235097e58e
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Addressed review comments
- removed mention of iGenomes
- clarified whom to contact for support
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2022-07-06 11:20:59 +02:00 |
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Gwenna Breton
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1d7a34b11f
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Removed comment about internal doc
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2022-07-06 11:17:58 +02:00 |
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Gwenna Breton
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b202ad70ac
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Removed mention of specific module versions
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2022-07-06 11:16:38 +02:00 |
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James A. Fellows Yates
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08435ca300
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Merge pull request #382 from jfy133/eva-java-correction
EAGER @ EVA Further Java workarounds
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2022-07-04 13:42:13 +02:00 |
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James A. Fellows Yates
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a141ff626b
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Merge branch 'master' into eva-java-correction
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2022-07-04 13:35:50 +02:00 |
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