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1791 commits

Author SHA1 Message Date
James Fellows Yates
b22e8b79c7 Fix cheaha config due to use of environmental variable 2022-09-01 11:01:23 +02:00
ameynert
69468e7ca7
Merge pull request #409 from kalayaneech/master
A new profile for adcra [KMUTT]
2022-09-01 09:55:12 +01:00
ameynert
28e59e38b4
Run prettier 2022-09-01 09:28:05 +01:00
Kalayanee Chairat
8e275182ea
Update main.yml 2022-09-01 15:16:56 +07:00
Kalayanee Chairat
bf2ab39ea0
Update README.md 2022-09-01 15:15:51 +07:00
Kalayanee Chairat
9681716205
Update adcra.config
Fixing typo
2022-09-01 15:11:18 +07:00
Kalayanee Chairat
700f14d828
Merge pull request #1 from nf-core/master
Merging from master
2022-09-01 15:07:43 +07:00
Simon Pearce
864da0b5be
Merge branch 'master' into crukmi 2022-08-31 18:19:47 +01:00
Bruno Grande
9a37404a04
Merge branch 'master' into bgrande/sage-aws 2022-08-31 09:22:07 -07:00
Bruno Grande
179b343bd2 Incorporate resource limits 2022-08-31 09:18:27 -07:00
Bruno Grande
c883723559 Simplify resource adjustments 2022-08-31 09:10:30 -07:00
SPearce
1e1ca1e96b Incorporating executor options 2022-08-31 15:35:57 +01:00
Annick Renevey
bfeafdbf25
Merge pull request #408 from nf-core/rnafusion_config_hasta
rnafusion setup for hasta usage [WIP]
2022-08-31 14:36:08 +02:00
Annick Renevey
242101db16 fix extra space 2022-08-31 14:26:32 +02:00
Annick Renevey
0851903f66 include new config in pipeline configs file 2022-08-31 14:19:07 +02:00
Annick Renevey
51871ea6fc rnafusion setup for hasta usage 2022-08-31 11:32:01 +02:00
Lara Ianov
08b62ede83
Merge pull request #404 from nf-core/cheaha_singularity_update
Cheaha Config Update
2022-08-30 14:45:50 -05:00
Austyn Trull
90f638d376 Updating the cheaha documentation to clarify that /data/temporary-scratch/atrull will be used as storage for files that would normally go into one of the temporary locations when using Singularity 2022-08-29 10:47:46 -05:00
James A. Fellows Yates
b33aef1431
Merge pull request #386 from andrewfrank/patch-2
Update google.config to fix custom VM memory error
2022-08-29 08:30:39 +02:00
James A. Fellows Yates
c70a95f9c9
Merge branch 'master' into patch-2 2022-08-29 08:23:31 +02:00
Bruno Grande
9c8cb71bc7
Merge branch 'master' into bgrande/sage-aws 2022-08-25 16:29:20 -07:00
Bruno Grande
317e5a16cb Improve AWS-related config for Sage profile 2022-08-25 16:24:52 -07:00
Harshil Patel
84b0b705a2
Merge pull request #405 from drpatelh/monkeypox
Replace NC_063383.1 fasta and gff and add Nextclade config
2022-08-25 12:57:43 +01:00
kalayaneech
93c4ba67a0 adding adcra configuration 2022-08-25 16:17:09 +07:00
Harshil Patel
8b9661825b Replace NC_063383.1 fasta and gff and add Nextclade config 2022-08-24 15:21:44 +01:00
Harshil Patel
d71e31c378
Merge pull request #403 from drpatelh/monkeypox
Add monkeypox genome files to viralrecon genome config file
2022-08-24 12:16:21 +01:00
Harshil Patel
8dcfcfd856 Add monkeypox genome files to viralrecon genome config file 2022-08-24 12:13:17 +01:00
Austyn Trull
8d5ae4c3ab Committing changes made by Brandon Wilk so that singularity containers will use scratch space 2022-08-23 15:30:13 -05:00
Ramprasad Neethiraj
49c71e0c28
Merge pull request #363 from ramprasadn/feat/hasta_update
Add a profile for stubruns in hasta
2022-08-23 22:14:18 +02:00
Ramprasad Neethiraj
9182b55acc
Merge branch 'master' into feat/hasta_update 2022-08-23 11:21:58 +02:00
Anders Jemt
9c26cfddaa
Merge pull request #390 from raysloks/feat/hasta_java_memory_fix
Feat/hasta java memory fix
2022-08-22 15:46:39 +02:00
Ramprasad Neethiraj
7ff2977a29 Merge branch 'master' of github.com:nf-core/configs into feat/hasta_update 2022-08-18 15:58:56 +02:00
Ramprasad Neethiraj
dd63dee7aa update conf 2022-08-18 15:56:41 +02:00
Ramprasad Neethiraj
1c942759ea update sentieon 2022-08-18 15:52:31 +02:00
Ramprasad Neethiraj
a6cce4ab6a
Merge branch 'master' into feat/hasta_java_memory_fix 2022-08-18 13:36:08 +02:00
Phil Ewels
ea89504bc7
Merge pull request #397 from ErikDanielsson/add-citation-cff
Add `CITATION.cff` for the nf-core publication
2022-08-18 09:27:08 +02:00
SPearce
8ae3cba5e3 Reduce MPILEUP to 5GB 2022-08-15 11:35:59 +01:00
SPearce
d0662a3acb Ran prettier 2022-08-15 09:33:30 +01:00
SPearce
a97b887d93 Written a help file 2022-08-12 16:57:04 +01:00
SPearce
0bfedde296 Initial attempt at a CRUKMI config file 2022-08-12 15:43:22 +01:00
Gwenna Breton
99df08f409
Merge pull request #395 from ClinicalGenomicsGBG/medair
New config: Add config for Medair
2022-08-09 11:03:56 +02:00
Gwenna Breton
0e4f2b40d3
Added email of IT group 2022-08-08 16:14:17 +02:00
Gwenna Breton
ffefefe0ab
Added contact emails 2022-08-08 16:11:55 +02:00
Gwenna Breton
2740b5efbf
Update docs/medair.md
Fixed typo

Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
2022-08-08 16:08:05 +02:00
Gwenna Breton
648025c1ce
Clarified where to store singularity images 2022-08-08 16:04:21 +02:00
Gwenna Breton
6aa78833c3
Merge branch 'master' into medair 2022-08-01 16:46:55 +02:00
James A. Fellows Yates
0b47849532
Update mpcdf.config 2022-07-27 14:23:29 +02:00
Alexander Peltzer
36487c8c25
Merge pull request #399 from nf-core/sanger
Sanger
2022-07-20 16:51:46 +02:00
Matthieu Muffato
dda1d810b1 Latest stable version (rather than an edge one) 2022-07-20 14:35:39 +01:00
Matthieu Muffato
1ee20f0bb0 2 cores should be enough for the nextflow manager itself 2022-07-20 14:35:22 +01:00