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114 commits

Author SHA1 Message Date
Edmund Miller
cb213a499c
ci: Another missing comma 2021-06-17 09:34:03 -05:00
Edmund Miller
7ff1c6cc7d
ci: Add sysbio 2021-06-16 21:19:49 -05:00
ikeller
af1e57027d edit config and readme 2021-05-19 09:46:07 +02:00
Barry digby
8340e89768 nuig.config first commit 2021-04-28 17:28:01 +01:00
Anthony Underwood
fa267c0cf9
Add sanger to tests 2021-04-21 21:01:25 +01:00
MaxUlysse
3918e0aa9d feat: remove kraken profile 2021-04-13 15:14:14 +02:00
James A. Fellows Yates
161c3a33d4
Merge branch 'master' into eva 2021-04-07 19:28:16 +02:00
James Fellows Yates
be1d35840d Add EVA and EAGER@EVA 2021-04-06 17:48:16 +02:00
phue
8fc60e2e70 add config for biohpc_gen 2021-03-29 19:25:58 +02:00
ameynert
2d90c919aa
Added eddie profile to github workflow tests 2021-03-24 13:51:37 +00:00
Asaf Peer
93bde78faa added JAX conf 2021-03-21 06:47:52 -04:00
Noirot Céline
7e9f83ee81 Add IFB config 2021-03-16 15:54:19 +01:00
James Fellows Yates
5bfb9510c7 Add to testing 2021-02-14 17:59:55 +01:00
Charles Plessy
1608b36dcf Institutional profile for Okinawa Institute of Science and Technology 2021-02-02 17:40:10 +09:00
James A. Fellows Yates
7cffcf809b
Update main.yml 2021-01-21 12:50:14 +01:00
James A. Fellows Yates
964cae4ac7
Add CEH to CI 2021-01-21 06:22:37 +01:00
Combiz Khozoie
4bb52358f5 updated Github Actions YML 2020-12-18 10:27:40 +00:00
lecorguille
c974972585 Add ABiMS - side files 2020-10-23 00:12:02 +02:00
James A. Fellows Yates
af8d25ed09
Update main.yml 2020-09-04 20:14:35 +02:00
Phil Ewels
a7c8cbc410 Fix new CI test 2020-06-26 14:30:53 +02:00
Phil Ewels
b587a2d031 Remove env vars from CI test and try running -show-profiles 2020-06-26 14:24:51 +02:00
Phil Ewels
da46b1cd9a Remove --custom_config_base from CI test command 2020-06-26 14:13:49 +02:00
Phil Ewels
18a1a319ec More uct_hex references 2020-06-17 15:25:07 +02:00
Adrian
3e4db8c845 adding icr_davros to test 2020-06-03 14:55:58 +01:00
Piotr Faba
f5e2a9f9f3 try without dummy.config: use relative path 2020-05-27 16:55:37 +02:00
Piotr Faba
3ad0003979 test without dummy config 2020-05-27 16:46:08 +02:00
Piotr Faba
1a9db371c3 remove echos 2020-05-27 16:43:32 +02:00
Piotr Faba
ac47d020cb debug: continue 2020-05-27 16:38:11 +02:00
Piotr Faba
ff5fdd097b debug 2020-05-27 16:35:55 +02:00
Piotr Faba
ab3070582e Fix paths to dummy.config 2020-05-27 16:32:19 +02:00
Piotr Faba
66f191a1cf declate NXF_GLOBAL_CONFIG in ci 2020-05-27 16:30:00 +02:00
Piotr Faba
1354ae4063 add bi config 2020-05-27 16:19:15 +02:00
ggabernet
fa01e6c5c1 add cfc_dev to test yml 2020-03-23 17:27:36 +01:00
Edmund Miller
b79f0f0a21
ci: add utd_gaymede to main 2020-03-09 20:11:52 -05:00
marcel-keller
f48a4cbfb8
Update main.yml 2020-03-09 16:25:19 +02:00
Alexander Peltzer
ebae81ceb3
Update main.yml
Drop CCGA, as it was removed in an intermediate merge.
2020-03-06 17:18:03 +01:00
Evan Floden
44cd3089de
Alphabetical ordering of GitHub workflows 2020-03-06 09:48:00 +01:00
Evan Floden
8a9d3ad8a0 First commit of Google Cloud config 2020-03-06 05:47:29 +00:00
marchoeppner
0830203b70 Adding new CCGA Med Cluster to profiles
Updating README and fixing linting errors in CCGA_MED profile

Fixing order in profile queue and removed leading slash from readme for ccga profile docs

Fixing order in profile queue and removed leading slash from readme for ccga profile docs
2020-02-11 11:12:51 +01:00
Maxime Garcia
78826c9d4e
Merge branch 'master' into UPPMAX 2019-12-05 12:52:34 +01:00
jfy133
3fc1377ff2 Remove mysterious new line 2019-12-05 12:16:01 +01:00
jfy133
41a795f996 Fixed github actions test 2019-12-05 12:14:01 +01:00
MaxUlysse
cdbdbee0eb replace -profile uppmax_devel by -profile uppmax,devel 2019-12-05 11:49:44 +01:00
James A. Fellows Yates
c725c71e4d
Merge branch 'master' into master 2019-11-26 20:34:42 +01:00
jfy133
c89ca84244 Updated github actions test - typo fix 2019-11-26 20:24:23 +01:00
jfy133
e6bf470962 Updated github actions test 2019-11-26 20:23:04 +01:00
Alexander Peltzer
9e6e4343d7
Merge branch 'master' into master 2019-11-26 15:13:32 +01:00
Noirot Céline
0fdcf8c70c
Update .github/workflows/main.yml
Co-Authored-By: Alexander Peltzer <apeltzer@users.noreply.github.com>
2019-11-26 15:10:13 +01:00
Alexander Peltzer
5c39c1ed1a
Merge branch 'master' into master 2019-11-26 15:07:31 +01:00
noirot
3d8da62db3 add genotoul profile name to the build matrix 2019-11-26 14:57:17 +01:00
Alexander Peltzer
bac91d03fa
Ignore czi stuff for now 2019-11-26 14:38:57 +01:00
Alexander Peltzer
2ebd2180ed
Add in SCRATCH env 2019-11-26 14:27:22 +01:00
Alexander Peltzer
47ac2085f7
Better names 2019-11-26 14:12:41 +01:00
Alexander Peltzer
0afe00ded5
Generalize name 2019-11-26 14:12:19 +01:00
Alexander Peltzer
c3c7c74d79
Better code 2019-11-26 14:11:16 +01:00
Alexander Peltzer
dea11df453
Both on PR and on push 2019-11-26 14:07:25 +01:00
Alexander Peltzer
ebb89f2714
Don't check that anymore 2019-11-26 14:06:30 +01:00
Alexander Peltzer
cb876594a3
Proper user tests now :-) 2019-11-26 13:57:32 +01:00
Alexander Peltzer
7e3efcac5c
Enjoy 2019-11-26 00:59:09 +01:00
Alexander Peltzer
3d7f5436b1
Its in workflows 2019-11-26 00:54:17 +01:00
Alexander Peltzer
5a1dbf2dc7
Rename configs tests 2019-11-26 00:52:39 +01:00
Alexander Peltzer
4062c8b4dc
Fix indentation 2019-11-26 00:51:08 +01:00
Alexander Peltzer
2d16917473
Fix linting 2019-11-26 00:34:55 +01:00
Alexander Peltzer
64a3240a51
Fix linting 2019-11-26 00:29:04 +01:00
Renamed from .github/main.yml (Browse further)