Barry digby
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24a4119e43
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memory test
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2021-04-29 14:24:57 +01:00 |
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Barry digby
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8340e89768
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nuig.config first commit
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2021-04-28 17:28:01 +01:00 |
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Alexander Peltzer
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c12c373969
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Merge pull request #235 from aunderwo/cambridge
Add Cambridge University HPC config
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2021-04-25 10:40:56 +02:00 |
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Anthony Underwood
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982d1a8f2a
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Fix markdown linting
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2021-04-22 16:41:05 +01:00 |
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Anthony Underwood
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29dcc160e3
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Create cambridge.md
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2021-04-22 16:04:29 +01:00 |
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Anthony Underwood
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3e8f9b3d4e
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Remove blank lines
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2021-04-22 15:57:09 +01:00 |
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Anthony Underwood
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f414446a88
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Add info on how to load Singularity into your path
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2021-04-22 15:38:36 +01:00 |
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Anthony Underwood
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b16b011bcc
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Add ~/bin as recommended location for nextflow executable
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2021-04-22 12:02:11 +01:00 |
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Anthony Underwood
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cc18d213dc
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Update sanger.md
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2021-04-21 20:24:08 +01:00 |
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Anthony Underwood
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40eb3e0201
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Update sanger.md
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2021-04-21 20:20:30 +01:00 |
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Anthony Underwood
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7163e8723d
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Create sanger.md
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2021-04-21 20:17:42 +01:00 |
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Maxime Garcia
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1548690ca6
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Update docs/uppmax.md
Co-authored-by: Pontus Freyhult <pontus_github@soua.net>
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2021-04-21 12:27:27 +02:00 |
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MaxUlysse
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bab9241243
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fix: markdownlint
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2021-04-21 11:51:14 +02:00 |
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MaxUlysse
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844246cc7d
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fix: clearer usage of module
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2021-04-21 11:28:58 +02:00 |
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MaxUlysse
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1a7ec56c33
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feat: more details
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2021-04-21 11:23:50 +02:00 |
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MaxUlysse
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c89877decc
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feat: use <PIPLEINE>
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2021-04-21 11:17:06 +02:00 |
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MaxUlysse
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658fa7ccda
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fix: markdownlint
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2021-04-21 11:08:16 +02:00 |
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Maxime Garcia
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79e3dd65a7
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Apply suggestions from code review
Co-authored-by: Pontus Freyhult <pontus_github@soua.net>
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2021-04-21 11:06:39 +02:00 |
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Maxime Garcia
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4eea06f0db
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Apply suggestions from code review
Co-authored-by: Pontus Freyhult <pontus_github@soua.net>
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2021-04-20 16:03:34 +02:00 |
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MaxUlysse
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1c1dd952fc
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fix: bullet list
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2021-04-20 15:58:51 +02:00 |
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Maxime Garcia
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e4d2ef0984
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Apply suggestions from code review
Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
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2021-04-20 15:53:54 +02:00 |
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MaxUlysse
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4930795cab
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feat: more complete docs
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2021-04-20 15:38:49 +02:00 |
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MaxUlysse
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10abca712b
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fix: first draft of bianca guide
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2021-04-16 17:01:58 +02:00 |
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James A. Fellows Yates
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12a4518803
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Markdown lint fix
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2021-04-15 22:29:15 +02:00 |
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James A. Fellows Yates
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0fc90586e0
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Update mpcdf.md
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2021-04-15 22:26:37 +02:00 |
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MaxUlysse
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3918e0aa9d
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feat: remove kraken profile
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2021-04-13 15:14:14 +02:00 |
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James A. Fellows Yates
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161c3a33d4
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Merge branch 'master' into eva
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2021-04-07 19:28:16 +02:00 |
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Alexander Peltzer
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91f50aad4e
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Merge pull request #221 from phue/biohpc_gen
Add BioHPC Genomics config
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2021-04-07 14:03:22 +02:00 |
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James Fellows Yates
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8dac4ca552
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Merge branch 'eva' of github.com:jfy133/configs into eva
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2021-04-06 17:53:32 +02:00 |
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James Fellows Yates
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60c66d93ac
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Markdown linting
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2021-04-06 17:53:27 +02:00 |
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James A. Fellows Yates
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832edaa450
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Merge branch 'master' into eva
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2021-04-06 17:51:46 +02:00 |
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James Fellows Yates
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be1d35840d
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Add EVA and EAGER@EVA
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2021-04-06 17:48:16 +02:00 |
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ameynert
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700776f759
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Change to shared Singularity cache
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2021-03-30 16:11:15 +01:00 |
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phue
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7c5a0871a3
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add note about required nextflow version
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2021-03-29 19:36:49 +02:00 |
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phue
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8fc60e2e70
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add config for biohpc_gen
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2021-03-29 19:25:58 +02:00 |
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Gisela Gabernet
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71a97ba316
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Merge pull request #185 from ggabernet/master
awsbatch config update
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2021-03-28 20:59:40 +02:00 |
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ameynert
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3a8e54f153
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Removed sneaky trailing whitespace.
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2021-03-24 13:58:10 +00:00 |
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ameynert
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a0d42f5153
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Fixed code blocks for markdown linting
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2021-03-24 13:55:31 +00:00 |
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Phil Ewels
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bfab371c94
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Merge branch 'master' into master
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2021-03-24 12:36:15 +01:00 |
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ameynert
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2a8ae2b214
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Update eddie.md
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2021-03-24 11:12:41 +00:00 |
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ameynert
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96fe6185a0
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IGMM-specific docs
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2021-03-24 11:01:41 +00:00 |
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Asaf Peer
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9b2d5bfead
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Merge pull request #216 from asafpr/master
Added JAX conf
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2021-03-24 03:31:14 -04:00 |
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ameynert
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791f3c95f3
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Pipeline specific configs moving to confs/pipeline
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2021-03-23 16:07:07 +00:00 |
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Alexander Peltzer
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5988c51361
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Merge pull request #211 from DoaneAS/master
Adding WCM.config for Weill Cornell Medicine cluster
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2021-03-23 14:58:27 +01:00 |
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Asaf Peer
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30c864e112
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added JAX conf
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2021-03-21 06:49:11 -04:00 |
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ameynert
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b48136a62e
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Added pipeline-specific config files
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2021-03-18 12:55:03 +00:00 |
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ameynert
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af6a6b1060
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Details on running on eddie
Removed Conda support, Singularity by default. Added login and screen session on wild west node options.
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2021-03-18 12:48:48 +00:00 |
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ameynert
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4ad6bb2bec
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Singularity info
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2021-03-17 14:50:40 +00:00 |
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Noirot Céline
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e3216ccf79
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typo
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2021-03-16 16:00:56 +01:00 |
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Noirot Céline
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cc17045914
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Add institution
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2021-03-16 15:58:29 +01:00 |
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Noirot Céline
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7e9f83ee81
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Add IFB config
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2021-03-16 15:54:19 +01:00 |
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Ashley S Doane
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6343a7f87c
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Update wcm.md
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2021-03-11 14:01:07 -05:00 |
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Ashley S Doane
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d630bcfb6c
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Create wcm.md
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2021-03-11 13:59:55 -05:00 |
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ameynert
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4c0111f598
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Eddie profile documentation initial commit
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2021-03-04 14:46:58 +00:00 |
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James A. Fellows Yates
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0bac3691e3
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Create mpcdf.config
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2021-02-14 18:07:40 +01:00 |
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James Fellows Yates
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a78aac327d
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Linting fixes
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2021-02-14 17:58:50 +01:00 |
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James Fellows Yates
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537f52a640
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Add MPI-EVA profile
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2021-02-14 17:50:20 +01:00 |
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ggabernet
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0909708b97
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update with upstream
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2021-02-09 22:01:27 +01:00 |
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Charles Plessy
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1608b36dcf
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Institutional profile for Okinawa Institute of Science and Technology
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2021-02-02 17:40:10 +09:00 |
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James A. Fellows Yates
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c4604450d8
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Update seg_globe.md
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2021-01-21 13:04:12 +01:00 |
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Åshild J. Vågene
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bcd137225e
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Update and rename ceh.md to seg_globe.md
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2021-01-21 11:46:46 +01:00 |
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Åshild J. Vågene
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ef80452577
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Update docs/ceh.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2021-01-21 11:16:46 +01:00 |
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James A. Fellows Yates
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2fd475c339
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Fix some linting errors
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2021-01-21 06:30:43 +01:00 |
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Åshild J. Vågene
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d108666950
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Update ceh.md
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2021-01-21 00:30:54 +01:00 |
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Åshild J. Vågene
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65831b73ef
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Create ceh.md
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2021-01-21 00:17:08 +01:00 |
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Combiz Khozoie
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a61992d144
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Added institutional configs for Imperial and Imperial MEDBIO. Added institutional pipeline configs for scflow for Imperial and Imperial MEDBIO
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2020-12-18 10:21:26 +00:00 |
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arontommi
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ac108379cd
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trailing spaces
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2020-11-26 13:58:16 +01:00 |
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arontommi
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c2c7265518
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fix linting errors
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2020-11-26 13:47:47 +01:00 |
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arontommi
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6480aef1db
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typo
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2020-11-26 11:41:33 +01:00 |
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arontommi
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f84fbb8f89
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typo
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2020-11-26 11:39:51 +01:00 |
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arontommi
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e6bb7a4852
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capital names
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2020-11-26 11:37:59 +01:00 |
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arontommi
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5726ef3456
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typo
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2020-11-26 11:26:08 +01:00 |
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arontommi
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06469901fe
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typo
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2020-11-26 11:24:29 +01:00 |
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arontommi
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ebf754bf43
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documentation for bianca
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2020-11-26 09:53:51 +01:00 |
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Phil Ewels
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e96455e180
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Update docs/uppmax.md
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2020-11-26 01:43:09 +01:00 |
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Phil Ewels
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d9a8009662
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Better UPPMAX docs
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2020-11-25 22:45:16 +01:00 |
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Andrew Frank
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d70fc2605a
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Fix parameters in google.md
Change parameters from hyphens to underscores to accurately reflect google.config
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2020-11-12 11:52:58 -05:00 |
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Gisela Gabernet Garriga
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885f0ce5f6
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awsbatch config update
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2020-11-09 22:41:38 +01:00 |
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lecorguille
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e3d733d87e
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Add ABiMS - fix lint
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2020-10-23 09:29:54 +02:00 |
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lecorguille
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4d03f72c78
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Add ABiMS - last bits of doc
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2020-10-23 09:27:12 +02:00 |
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lecorguille
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6ee6b7bf56
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Add ABiMS - remove a useless link
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2020-10-23 00:12:02 +02:00 |
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lecorguille
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23ba1c58b1
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Add ABiMS - NXF_SINGULARITY_CACHEDIR
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2020-10-23 00:11:58 +02:00 |
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lecorguille
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f21d16b24f
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Add ABiMS - fix lint
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2020-10-22 17:47:25 +02:00 |
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lecorguille
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a63ca751ee
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Add ABiMS
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2020-10-22 16:57:41 +02:00 |
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James A. Fellows Yates
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7088ed196f
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Update mpcdf.md
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2020-10-22 11:08:29 +02:00 |
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James A. Fellows Yates
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0d6e269322
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Update mpcdf.md
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2020-10-15 14:24:08 +02:00 |
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James A. Fellows Yates
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9df85be081
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Update mpcdf.md
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2020-09-03 20:27:15 +02:00 |
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James A. Fellows Yates
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09cd5cad65
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Update mpcdf.md
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2020-09-03 20:25:37 +02:00 |
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James A. Fellows Yates
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0501ae4c1a
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Started docs for mpcdf
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2020-09-03 20:21:49 +02:00 |
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James A. Fellows Yates
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09cfabd37f
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Add new microbiome_screening profile to docs
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2020-08-11 09:20:31 +02:00 |
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drpatelh
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165af5122f
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Update docs
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2020-08-03 11:39:23 +01:00 |
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jfy133
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15dad7e2e7
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Add caveats for EAGER @ SHH profiles
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2020-07-08 09:47:03 +02:00 |
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James A. Fellows Yates
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b2e043ab59
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Add documentation for HOPS profile for eager @ SHH
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2020-07-07 14:35:42 +02:00 |
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Phil Ewels
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cd9fbb22dc
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Merge pull request #161 from ewels/uct_hpc
Update UCT hex -> hpc
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2020-06-22 09:18:43 +02:00 |
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Phil Ewels
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29f5fa6ce4
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uct_hpc docs, readme
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2020-06-17 15:22:42 +02:00 |
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Phil Ewels
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17824d2d62
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Merge czbiohub_aws_highpriority profile into czbiohub_aws
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2020-06-16 15:20:39 +02:00 |
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phue
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6d356cc918
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CBE: don't load singularity module
singularity is now installed from CentOS repos, the environment module will be removed
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2020-06-05 12:07:26 +02:00 |
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Alexander Peltzer
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f877644059
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Merge branch 'master' into master
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2020-05-29 11:43:47 +02:00 |
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Alexander Peltzer
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dd56355c7c
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Update bi.md
No trailing spaces it said.
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2020-05-28 10:18:16 +02:00 |
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Alexander Peltzer
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f4df5b5a75
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Add BI Docs
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2020-05-28 10:16:22 +02:00 |
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