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Author SHA1 Message Date
Edmund Miller
21e1037e0c
docs(sysbio): Add rnaseq specific docs 2021-06-17 09:18:45 -05:00
Edmund Miller
e35c5fd1d8
fix(sysbio): Add nf-core params 2021-06-17 08:32:31 -05:00
Edmund Miller
41ae99d34a
feat(sysbio): Add cleanup 2021-06-17 08:17:55 -05:00
Edmund Miller
87c8e346e0
fix(sysbio): Change filetype 2021-06-17 08:14:48 -05:00
Edmund Miller
14a2106c63
fix(sysbio): Move rnaseq specific things to pipeline config 2021-06-17 08:14:48 -05:00
Edmund Miller
7ff1c6cc7d
ci: Add sysbio 2021-06-16 21:19:49 -05:00
Edmund Miller
2a958f5ce3
docs: Add sysbio 2021-06-16 21:19:38 -05:00
Edmund Miller
472082254a
fix(sysbio): Add Star resources 2021-06-16 21:18:48 -05:00
Edmund Miller
b11f137901
fix(sysbio): Leave igenomes unfinished 2021-06-16 21:18:28 -05:00
Edmund Miller
04d0b27e81
fix(sysbio): Reduce memory on high processes 2021-06-16 21:17:40 -05:00
Edmund Miller
2b58a62a9b
feat(utd): Add initial sysbio config 2021-06-11 14:50:58 -05:00
Gisela Gabernet
9cca0eaf85
Merge pull request #250 from ggabernet/master 
cfc config
 2021-06-11 15:05:16 +02:00
ggabernet
c3385593cb revert cfc config 2021-06-11 14:59:09 +02:00
Gisela Gabernet
1f45b9c297
Merge pull request #249 from nf-core/mseybold-patch-1 
Update cfc.config
 2021-06-11 14:42:37 +02:00
mseybold
f196de8246
Update cfc.config 
singularity is now installed natively on the nodes, so no more need for a module here
 2021-06-10 12:34:58 +02:00
James A. Fellows Yates
756f067213
Merge pull request #248 from jfy133/eva 
Fix MakeSeqDict eager @ eva
 2021-06-07 13:26:05 +02:00
James A. Fellows Yates
da8e002969
Merge pull request #247 from jfy133/shh-fx 
Fix eageR@SHH HOPS profile human ref path
 2021-06-07 10:55:01 +02:00
James A. Fellows Yates
fc8b1162c1
Fix HOPS huamn ref path 2021-06-07 10:48:35 +02:00
James A. Fellows Yates
5bf57894a5
Merge pull request #246 from jfy133/shh-update 
Make eager@SHH big_data go by default to medium via run time
 2021-06-04 12:32:28 +02:00
James A. Fellows Yates
31d46cb0a9
Make big_data go by default to medium via run time 2021-06-04 12:22:54 +02:00
Øyvind Almelid
c75ceec35d
Merge pull request #244 from oalmelid/master 
eddie.conf: Add TMPDIR and mount for it to singularity configuration + Migrate to BioinformaticsResources for genomes.
 2021-05-25 10:03:05 +01:00
Øyvind Almelid
f6578f727d Add TMPDIR and mount for it to singularity configuration 2021-05-25 09:54:08 +01:00
Olga Botvinnik
2ac4693421
Merge pull request #243 from nf-core/olgabot-patch-1 
executor.cli --> aws.batch.cliPath
 2021-05-20 10:34:55 -07:00
Maxime U. Garcia
483e24aab6
Merge pull request #242 from maxulysse/master_munin 
feat: update owner of munin profile
 2021-05-20 10:08:32 +02:00
MaxUlysse
05548bdb75 fix: forgotten } 2021-05-20 09:37:48 +02:00
Olga Botvinnik
8166e0f606
executor.cli --> aws.batch.cliPath 2021-05-19 13:36:15 -07:00
MaxUlysse
73fcc4495a feat: update owner of profile 2021-05-19 20:46:52 +02:00
Phil Ewels
9c4830c8d5
Merge pull request #238 from nf-core/hebbe-config-fix 2021-05-19 17:46:52 +02:00
James A. Fellows Yates
3bcd55966d
Update eva.config 2021-05-05 11:39:33 +02:00
James A. Fellows Yates
f2413553a3
Merge pull request #240 from jfy133/shh 
eager@SHH Add additional retry allowance for silly big data in markdups
 2021-05-05 10:52:58 +02:00
James A. Fellows Yates
a849fe991c
Add additional retry allowance for silly big data in markdups 2021-05-04 21:43:19 +02:00
Maxime U. Garcia
77bd7f567f
Merge pull request #228 from asafpr/master 
updated jax resources
 2021-05-02 14:47:19 +02:00
Phil Ewels
76b62b478d
Fix hebbe withName regex 2021-04-29 23:06:56 +02:00
Phil Ewels
fb40b27eab
Merge pull request #237 from maxulysse/master_opengraph 2021-04-26 17:23:08 +02:00
MaxUlysse
867e1aff61 feat: remove social preview image to use GitHub OpenGraph 2021-04-26 12:41:56 +02:00
Alexander Peltzer
c12c373969
Merge pull request #235 from aunderwo/cambridge 
Add Cambridge University HPC config
 2021-04-25 10:40:56 +02:00
Alexander Peltzer
d624313abd
Merge pull request #236 from aunderwo/sanger 
Add Sanger to README
 2021-04-25 10:40:41 +02:00
Anthony Underwood
e1b1402f50
Add Cambridge to README 2021-04-24 13:22:54 +01:00
Anthony Underwood
5aadc5ec0e
Add Sanger to README 2021-04-24 13:21:19 +01:00
FriederikeHanssen
9cf19d5246
Merge pull request #210 from FriederikeHanssen/cfc_sarek 
Cfc sarek
 2021-04-23 17:22:01 +02:00
Gisela Gabernet
4e9e5d2c67
Merge branch 'master' into cfc_sarek 2021-04-23 16:47:04 +02:00
Anthony Underwood
b660cb7c09
Merge pull request #234 from aunderwo/sanger 
Add a Sanger config and documentation
 2021-04-22 16:41:33 +01:00
Anthony Underwood
982d1a8f2a
Fix markdown linting 2021-04-22 16:41:05 +01:00
Anthony Underwood
29dcc160e3
Create cambridge.md 2021-04-22 16:04:29 +01:00
Anthony Underwood
8b3951b244
Create cambridge.config 2021-04-22 16:00:37 +01:00
Anthony Underwood
3e8f9b3d4e
Remove blank lines 2021-04-22 15:57:09 +01:00
Anthony Underwood
f414446a88
Add info on how to load Singularity into your path 2021-04-22 15:38:36 +01:00
Anthony Underwood
b16b011bcc
Add ~/bin as recommended location for nextflow executable 2021-04-22 12:02:11 +01:00
Anthony Underwood
351c5773f0
Add queue limits for 'normal' 2021-04-22 11:59:34 +01:00
Anthony Underwood
fa267c0cf9
Add sanger to tests 2021-04-21 21:01:25 +01:00