395 commits

Author	SHA1	Message	Date
Sarah Guinchard	84457cc655	Update documentation	2022-05-12 11:01:36 +02:00
sofstam	c59149d64c	Update docs for hasta config	2022-05-12 10:47:03 +02:00
James Fellows Yates	e1f780d976	Add taxprofiler for eVA	2022-05-12 07:54:17 +01:00
James Fellows Yates	4885b672b1	Prettier	2022-04-25 11:46:32 +02:00
Alex Rajewski	766eb450be	usage notes	2022-04-22 10:23:19 -07:00
James A. Fellows Yates	b0c9ac9be8	Update eva.md	2022-03-28 09:02:26 +02:00
b97pla	9a6cdfc21e	removed process-specific requirements for sarek, request miarka high-mem node	2022-03-24 14:25:43 +01:00
b97pla	5466d927f1	added requirements for uppmax cluster miarka	2022-03-23 15:29:40 +01:00
Edmund Miller	6c37bf3b20	style: Run prettier	2022-03-21 19:23:28 -05:00
James A. Fellows Yates	962d86d604	Merge pull request #346 from sagc-bioinformatics/sahmri ... Added SAHMRI profile	2022-03-18 13:01:36 +01:00
James A. Fellows Yates	a2e2e94333	Merge pull request #344 from njspix/vai ... Add VAI configuration	2022-03-14 14:36:00 +01:00
Nathan Watson-Haigh	dba3fb4c1d	Added SAHMRI HPC profile docs	2022-03-13 00:05:34 +10:30
Nathan Watson-Haigh	b638694bd0	Added SAHMRI HPC profile	2022-03-12 21:17:33 +10:30
Matiss	6c79c75eec	Merge pull request #290 from maxozo/master ... added leicester profile	2022-03-11 09:21:09 +00:00
Spix	429c7b4fa8	initial commit	2022-03-07 15:01:46 -05:00
Alexander Peltzer	d0d86bfb2a	Merge pull request #339 from jfy133/rnaseq_mpcdf ... Add RNASEQ specific config for MPCDF	2022-03-07 13:59:08 +01:00
James A. Fellows Yates	975fca6721	Apply suggestions from code review	2022-03-07 13:51:00 +01:00
Natalia Zajac	c2e0c9e6d4	Update on md file	2022-03-07 12:59:56 +01:00
Natalia Zajac	e07a0e548e	Config Addition	2022-03-04 12:16:01 +01:00
James Fellows Yates	70318c3b2a	Tweak eager settigs	2022-03-03 14:29:30 +01:00
James Fellows Yates	7112e74b73	Tweak settings based on latest batch specs	2022-03-03 13:43:40 +01:00
James Fellows Yates	e649bfbb2e	Linting	2022-03-03 12:26:14 +01:00
James Fellows Yates	94f8cbcb84	Add rnaseq pipeline specific config for MPCDF	2022-03-03 12:20:02 +01:00
James A. Fellows Yates	121452afad	Linting	2022-03-02 08:51:20 +01:00
James A. Fellows Yates	15a0571eae	Fix markdown	2022-03-02 08:50:42 +01:00
James A. Fellows Yates	adcfe22f98	Remove draco entry to MPCDF profiles due to decomissioning	2022-03-02 08:38:55 +01:00
James A. Fellows Yates	a6c12d8edc	Merge pull request #322 from U-BDS/master ... Add UAB Cheaha profile	2022-03-01 08:29:54 +01:00
James A. Fellows Yates	4fbebac9b3	Merge pull request #304 from PCQuilis/patch-1 ... Create marvin.md added marvin config	2022-02-28 15:03:07 +01:00
James A. Fellows Yates	d6f5209afc	Update marvin.md	2022-02-28 15:01:12 +01:00
Combiz Khozoie	a77f718ae2	Merge pull request #330 from nf-core/master ... Pulling master to branch	2022-02-11 14:18:01 +00:00
Matthias Hörtenhuber	b98ab26662	fix markdownlint errors	2022-02-11 14:09:16 +01:00
Combiz Khozoie	34d9e7a967	Update imperial.md ... Updated docs to reflect use of internal profiles	2022-02-11 00:08:08 +00:00
Combiz Khozoie	5aa1abda26	Delete imperial_mb.md ... Deprecated in favour of internal profiles within the single imperial.config	2022-02-11 00:07:05 +00:00
Combiz Khozoie	14c7662762	Update imperial.md ... Updated docs to reflect restructuring for internal profiles	2022-02-10 23:49:43 +00:00
phue	a6dd3aa0f1	cbe: update recommended nextflow version in docs ... otherwise, the new anaconda requirements will cause conflicts	2022-02-04 10:21:52 +01:00
Lara Ianov	f876227a38	added note on screen, conda, and interactive partitions	2022-01-28 12:18:11 -06:00
Austyn Trull	06541411dd	Initial commit of cheaha profile	2022-01-28 11:37:42 -06:00
Kevin Brick	afb6fbb767	Trailing spaces	2021-12-17 00:46:50 -05:00
Kevin Brick	05f7b59573	Update nihbiowulf.md	2021-12-17 00:44:39 -05:00
Kevin Brick	9cf4f69ff3	Add files via upload	2021-12-17 00:37:11 -05:00
praveenraj2018	00a3ed0fa6	Formatting	2021-12-14 21:24:18 +01:00
Praveen	b4d5330c0e	Added rnavar pipeline config for Munin	2021-12-14 03:52:37 +01:00
PCQ	a72f1a243c	Create marvin.md	2021-12-10 17:39:32 +01:00
Venkat Malladi	d722e7206e	Fix readme to remove blob account.	2021-11-18 18:06:54 -06:00
Phil Ewels	4785ceccba	Merge pull request #245 from ikeller/unibe_ibu ... Unibe ibu	2021-11-19 00:56:25 +01:00
Phil Ewels	b25bd1ce42	Update docs/azurebatch.md	2021-11-19 00:54:39 +01:00
Venkat Malladi	ed4c1d5f22	Remove work_dir option.	2021-11-18 17:52:24 -06:00
Phil Ewels	286fa6753a	Apply suggestions from code review	2021-11-19 00:07:33 +01:00
Phil Ewels	a26b3bf1e3	Merge branch 'master' into unibe_ibu	2021-11-19 00:02:30 +01:00
Venkat Malladi	f25dc57f00	Fix headers.	2021-11-18 15:50:12 -06:00
Venkat Malladi	1dacc2f3fe	Fix liniting errors in headers.	2021-11-18 15:49:08 -06:00
Venkat Malladi	845a9ce971	Update Readme with more inforamtion on the options.	2021-11-18 15:47:27 -06:00
Venkat Malladi	219244f1b4	Add in sample datastorage for Illumina Platinum genomes.	2021-11-18 15:28:34 -06:00
Venkat Malladi	237f91a3b7	Add in minmum config for azure.	2021-11-18 14:51:39 -06:00
Harshil Patel	a098ad9e06	Add Chris as main contact at The Crick	2021-11-03 11:11:05 +00:00
Matiss Ozols	5222d7ed9b	added leicester profile	2021-10-21 19:08:06 +01:00
Matiss Ozols	1f58ea42c7	added leicester profile	2021-10-21 19:06:03 +01:00
Matiss Ozols	98a69683c2	added leicester profile	2021-10-21 19:04:48 +01:00
Matiss Ozols	f8b932ae2d	added leicester profile	2021-10-21 18:32:57 +01:00
James A. Fellows Yates	73b6b74c69	Merge pull request #279 from pierrespc/master ... Added Configuration files for running in Maestro HPC at Pasteur Institute, Paris	2021-10-08 19:15:47 +02:00
James A. Fellows Yates	98bbc2b744	Linting	2021-10-08 14:11:39 +02:00
James A. Fellows Yates	b26e495e19	Apply suggestions from code review	2021-10-08 14:08:51 +02:00
pierrespc	2d102eafbc	format docs	2021-10-08 13:46:47 +02:00
pierrespc	035ab61f61	added unlimitedtime profile to maestro; changed cache for bwa process	2021-10-08 09:05:46 +02:00
pierrespc	1621585558	improving documentation	2021-10-04 16:08:33 +02:00
pierrespc	e5d4a357c5	clean doc	2021-10-04 15:08:01 +02:00
pierrespc	136fd44e0c	corrected docs/maestro.config	2021-09-29 13:50:56 +02:00
James A. Fellows Yates	e8b48416bc	Update docs/alice.md	2021-09-28 12:52:31 +02:00
Bjørn Peare Bartholdy	ad83430632	Update docs/alice.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2021-09-28 12:43:54 +02:00
Bjørn Peare Bartholdy	197bd6cfb1	Merge branch 'nf-core:master' into master	2021-09-28 12:09:50 +02:00
bbartholdy	b6ccb46383	add ALICE profile	2021-09-28 12:08:27 +02:00
Mei Wu	c2d74b290a	fix md	2021-09-27 16:25:02 +02:00
Mei Wu	a8a2027f70	Merge branch 'master' into hasta	2021-09-27 16:12:23 +02:00
Mei Wu	ae0adb056f	initial commit	2021-09-27 16:05:19 +02:00
pierrespc	3b593d46ec	merged two pasteur config files for maestro	2021-09-20 15:14:50 +02:00
Harshil Patel	5068e4806f	Merge pull request #271 from theoportlock/master ... Adds Rosalind config for KCL!	2021-09-17 13:36:19 +01:00
theoportlock	0fd5265f7b	Updates the README	2021-09-17 13:21:38 +02:00
pierrespc	b9682bbc91	requires files edited	2021-09-16 12:53:17 +02:00
Marc Trunjer Kusk Nielsen	9a8644ef43	Update computerome.md	2021-09-15 11:10:02 +02:00
Marc Trunjer Kusk Nielsen	cf899a2a4e	Update computerome.md	2021-09-13 08:48:27 +02:00
Marc Trunjer Kusk Nielsen	f46172c25b	Update computerome.md ... Update with usage, heavily inspired by the UPPMAX docs	2021-09-13 08:16:11 +02:00
Marc Trunjer Kusk Nielsen	463df26c72	Merge branch 'nf-core:master' into computerome	2021-09-10 14:47:05 +02:00
theoportlock	b240142cc3	Adds rosalind configuration	2021-09-08 14:33:39 +02:00
Rogan Grant	54298ca0f7	Merge branch 'nf-core:master' into master	2021-09-04 15:37:03 -05:00
Marc Trunjer Kusk Nielsen	aad2486215	Create computerome.md	2021-08-31 14:10:19 +02:00
James Fellows Yates	59af7f0eee	Delete SHH profiles due to decommissioning	2021-08-20 10:15:39 +02:00
Rogan Grant	f793ffaace	Updated iGenomes location	2021-08-03 15:10:54 -05:00
Rogan Grant	079258ebbb	Minor text edits	2021-07-29 11:38:40 -05:00
Rogan Grant	482478878d	Added instructions for module loading	2021-07-28 18:11:10 -05:00
Rogan Grant	40170632aa	First draft of markdown file, with instructions for installing nextflow and getting access	2021-07-28 13:04:32 -05:00
Barry digby	ef6b13e377	tabs rm	2021-07-28 12:19:11 +01:00
Barry digby	f62298d211	w	2021-07-28 11:44:06 +01:00
Barry digby	2fc8082aad	w	2021-07-28 11:43:39 +01:00
Barry digby	11cb6cc70d	w	2021-07-28 11:41:42 +01:00
Barry digby	380adf083a	markdowwwwn	2021-07-28 11:41:16 +01:00
Barry digby	2a06d956b3	mdlint so picky : (	2021-07-27 17:18:42 +01:00
Barry digby	2b6e80561a	Merge branch 'master' of https://github.com/nf-core/configs into	2021-07-27 17:13:17 +01:00
Barry digby	04c0da5a2f	nuig confg (lugh)	2021-07-27 17:05:27 +01:00
ameynert	5224eb5574	Updated resources folder & institute name ... Local resources folder was re-organized & re-named BioinformaticsResources. Added note about viralrecon & atacseq pipeline-specific config. IGMM name-changed recently; updated to IGC.	2021-07-21 12:15:17 +01:00
Maxime U. Garcia	30e058abf0	Merge branch 'master' into master_kraken	2021-07-20 09:26:56 +02:00