James A. Fellows Yates
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46f046d477
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Update eva.config
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2022-02-28 14:00:37 +01:00 |
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James A. Fellows Yates
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d7d9951dbf
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Insert h_vmem for all nf-core pipelines
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2022-02-28 14:00:16 +01:00 |
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James A. Fellows Yates
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6210ee874c
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Update eva.config
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2022-02-28 13:57:37 +01:00 |
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Mei Wu
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ff5750936d
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Merge pull request #332 from projectoriented/hasta/markdupe_remove_cpus
picard md is single threaded
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2022-02-23 16:40:57 +01:00 |
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Mei Wu
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dcba537d15
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picard md is single threaded
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2022-02-21 16:19:17 +01:00 |
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Maxime U. Garcia
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91b5875b44
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Merge pull request #331 from nf-core/praveenraj2018-patch-1
Added: runOptions to singularity
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2022-02-14 13:12:11 +01:00 |
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Maxime U. Garcia
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41e00ae8f9
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Update conf/munin.config
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2022-02-14 13:11:46 +01:00 |
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Praveen Raj S
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90936a5518
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Added: runOptions to singularity
To bind external mount directories at runtime.
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2022-02-14 12:45:20 +01:00 |
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Combiz Khozoie
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2d434c6ee5
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Merge pull request #321 from nf-core/combiz-patch-1
Imperial config updates
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2022-02-11 14:49:30 +00:00 |
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Maxime U. Garcia
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4a936a685e
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Merge pull request #317 from nf-core/praveenraj2018-patch-1
Added genome parameter
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2022-02-11 15:33:18 +01:00 |
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Combiz Khozoie
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a77f718ae2
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Merge pull request #330 from nf-core/master
Pulling master to branch
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2022-02-11 14:18:01 +00:00 |
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Matthias Hörtenhuber
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0d18767d0c
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Merge pull request #329 from mashehu/master
update node version for markdownlint
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2022-02-11 14:32:38 +01:00 |
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Matthias Hörtenhuber
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b98ab26662
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fix markdownlint errors
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2022-02-11 14:09:16 +01:00 |
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Matthias Hörtenhuber
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fcc856c8da
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update node version for markdownlint
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2022-02-11 11:03:18 +00:00 |
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Combiz Khozoie
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3ce32f50c4
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Update imperial.config
Moved params configs from internal profile to universal
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2022-02-11 11:02:40 +00:00 |
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Combiz Khozoie
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683564de1b
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Update main.yml
Removed deprecated imperial medbio from GHA
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2022-02-11 09:35:18 +00:00 |
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Combiz Khozoie
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8937699abe
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Update README.md
Added imperial docs link
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2022-02-11 09:33:54 +00:00 |
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Combiz Khozoie
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f33bc965d6
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Update nfcore_custom.config
Removed deprecated medbio config
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2022-02-11 09:32:50 +00:00 |
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Combiz Khozoie
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b99b74b2d3
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Update imperial.config
Fixed indent
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2022-02-11 00:26:45 +00:00 |
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Combiz Khozoie
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c5e4ac2025
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Update scflow.config
Removed line corresponding to profile deprecated by change to internal profiles
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2022-02-11 00:25:44 +00:00 |
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Combiz Khozoie
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34d9e7a967
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Update imperial.md
Updated docs to reflect use of internal profiles
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2022-02-11 00:08:08 +00:00 |
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Combiz Khozoie
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5aa1abda26
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Delete imperial_mb.md
Deprecated in favour of internal profiles within the single imperial.config
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2022-02-11 00:07:05 +00:00 |
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Combiz Khozoie
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14c7662762
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Update imperial.md
Updated docs to reflect restructuring for internal profiles
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2022-02-10 23:49:43 +00:00 |
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Combiz Khozoie
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38a05a6531
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Update imperial.config
Reworked to use internal profiles for the Imperial HPC and the MedBio cluster.
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2022-02-10 23:46:14 +00:00 |
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Combiz Khozoie
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e1d0bf0cd2
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Delete imperial_mb.config
Separate config for the medbio queue now deprecated in favour of an internal profile within the main imperial.config
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2022-02-10 23:44:49 +00:00 |
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Combiz Khozoie
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fe5474a029
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Update imperial.config
Multiple process level updates reflecting the latest job sizing guidelines for the Imperial HPC
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2022-02-10 23:02:47 +00:00 |
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Harshil Patel
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8fa6ab9b35
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Merge pull request #323 from stevin-wilson/patch-1
Added ARTIC v4.1 primer set information
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2022-02-10 19:17:47 +00:00 |
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James A. Fellows Yates
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92424ee2c3
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Merge pull request #328 from jfy133/eva-update
eager @ EVA walltime whole year
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2022-02-10 17:23:04 +01:00 |
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James Fellows Yates
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88ddc9eee7
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fffff
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2022-02-10 11:34:57 +01:00 |
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James Fellows Yates
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d7d0f5cecc
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Change base time
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2022-02-10 11:32:49 +01:00 |
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James Fellows Yates
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dbd78f8075
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Re add .
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2022-02-10 11:26:18 +01:00 |
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James Fellows Yates
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dd94895f16
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remove quotes
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2022-02-10 11:22:45 +01:00 |
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James Fellows Yates
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39c2d9b25b
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Oops
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2022-02-10 11:19:16 +01:00 |
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James Fellows Yates
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c0ee3225ad
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Add times for 365d
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2022-02-10 11:02:52 +01:00 |
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James A. Fellows Yates
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192839c8be
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Merge pull request #327 from nf-core/TCLamnidis-patch-2
Removed all time limits
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2022-02-10 10:22:53 +01:00 |
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Thiseas C. Lamnidis
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fa4075c2a0
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Removed all time limits
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2022-02-10 10:00:18 +01:00 |
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James A. Fellows Yates
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64355b84d2
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Merge pull request #325 from jfy133/eva-update
Read add empty BAM exit code for qualimap 255 for eager @ EVA
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2022-02-08 11:28:36 +01:00 |
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James A. Fellows Yates
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2b06293f64
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Read add empty BAM exit code for qualitmap 255
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2022-02-08 11:15:17 +01:00 |
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James A. Fellows Yates
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8d286e3b69
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Merge pull request #324 from jfy133/eva-update
New attempt of workaround SGE + Java incompatibility for eager @ EVA
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2022-02-06 20:02:03 +01:00 |
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James A. Fellows Yates
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8c5a54ac9f
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Update conf/pipeline/eager/eva.config
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2022-02-06 19:37:53 +01:00 |
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James A. Fellows Yates
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aa525c6ebf
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Allow exit code 1 retry for all java processes
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2022-02-06 09:07:53 +01:00 |
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Stevin Wilson
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dbb71161c5
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Added ARTIC v4.1 primer set information
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2022-02-04 15:31:51 -05:00 |
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Patrick Hüther
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8ff6f302b4
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Merge pull request #320 from rbpisupati/cbe-singularity
cbe: update config and docs
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2022-02-04 10:40:16 +01:00 |
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phue
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7bf6f284fa
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cbe: lower the threshold for switching to m queue
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2022-02-04 10:33:00 +01:00 |
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phue
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49810a69b3
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cbe: add gpu support
just in case.. note that this will need --nv in containerOptions in order to mount cuda libs into the container
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2022-02-04 10:31:58 +01:00 |
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phue
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a6dd3aa0f1
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cbe: update recommended nextflow version in docs
otherwise, the new anaconda requirements will cause conflicts
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2022-02-04 10:21:52 +01:00 |
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phue
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52b6f7da21
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update anaconda module
not sure why a binary distribution needs a buildenv at all, but well
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2022-02-04 10:18:59 +01:00 |
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phue
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c3db683535
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Merge branch 'master' of github.com:nf-core/configs into cbe-singularity
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2022-02-04 10:14:52 +01:00 |
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phue
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b5ab4a8258
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Revert "changes to cbe module loading"
This reverts commit 7c1c4c7fa4.
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2022-02-04 10:13:12 +01:00 |
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James A. Fellows Yates
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81fe720b00
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Update eva.config
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2022-02-04 09:31:33 +01:00 |
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