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Author	SHA1	Message	Date
James A. Fellows Yates	4804052b23	Update SHH nf-core/eager pipeline docs	2020-05-04 21:04:17 +02:00
James A. Fellows Yates	d42d7f4146	Sets the bwa aln parameter to 0.01 which is more commonly used at SHH	2020-05-04 21:02:16 +02:00
FriederikeHanssen	d6813d9c39	Add scratch = true to avoid writing of intermediate file to /tmp	2020-05-04 17:09:43 +02:00
Maxime Garcia	fe77f02551	Merge pull request #150 from MaxUlysse/Munin ... update rnafusion munin specific config	2020-04-28 17:46:17 +02:00
MaxUlysse	e6f4d58fa6	update rnafusion munin specific config	2020-04-28 17:06:04 +02:00
Adrian	ad12bd4ad1	testing automounts	2020-04-28 16:03:06 +01:00
Adrian	1e68a10ef0	adding documentation for icr_davros	2020-04-28 16:02:26 +01:00
Harshil Patel	2300d5a962	Update genomes.config	2020-04-09 18:22:41 +01:00
Harshil Patel	a17cac1ceb	Merge pull request #149 from MaxUlysse/viralreconupdate ... Viralreconupdate	2020-04-09 18:22:06 +01:00
Harshil Patel	53125368be	Merge branch 'master' into viralreconupdate	2020-04-09 18:21:05 +01:00
Harshil Patel	6834f020cb	Update viralrecon.config	2020-04-09 17:49:15 +01:00
MaxUlysse	5678494e45	fix typo	2020-04-09 17:13:19 +02:00
MaxUlysse	50a44d037b	better docs and organisation of giles	2020-04-09 17:02:36 +02:00
Harshil Patel	6adc7342e9	Merge pull request #148 from MaxUlysse/viralrecon ... add viralrecon specific config	2020-04-09 13:34:23 +01:00
Harshil Patel	4fd9b73cec	Update pipeline/viralrecon.config	2020-04-09 13:31:39 +01:00
Harshil Patel	290d0a2180	Update pipeline/viralrecon.config	2020-04-09 13:31:20 +01:00
MaxUlysse	19316ce852	add viralrecon specific config	2020-04-09 13:40:35 +02:00
Maxime Garcia	de5b7717ff	Merge pull request #147 from nf-core/MaxUlysse-patch-1 ... Update uppmax.config	2020-04-09 12:08:41 +02:00
Maxime Garcia	34dc18faf6	Update uppmax.config	2020-04-09 11:35:37 +02:00
Adrian Larkeryd	405801638a	icr_davros sarek config description	2020-04-08 11:56:17 +01:00
Adrian Larkeryd	78be4b358e	icr_davros igenomes base	2020-04-08 11:55:16 +01:00
Adrian Larkeryd	82965d25c8	hostname warning for davros	2020-04-08 11:54:34 +01:00
Maxime Garcia	d1ff87a416	Merge pull request #145 from bioatlas/master ... Adding UPPMAX specific config for ampliseq	2020-03-31 15:46:21 +02:00
Daniel Lundin	e77cd38092	Adding ampliseq/UPPMAX doc to README.md	2020-03-31 15:42:25 +02:00
Daniel Lundin	e0f9374272	Update pipeline/ampliseq.config ... Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>	2020-03-31 15:33:19 +02:00
Daniel Lundin	5a557ed7d5	Update pipeline/ampliseq.config ... Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>	2020-03-31 15:33:12 +02:00
Daniel Lundin	79ef94de47	Update pipeline/ampliseq.config ... Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>	2020-03-31 15:33:04 +02:00
Daniel Lundin	c8de9be701	Adding UPPMAX specific config for ampliseq	2020-03-31 15:17:24 +02:00
Phil Ewels	554ab6673c	Merge pull request #144 from MaxUlysse/UPPMAX ... [UPPMAX] add s.* pattern for bianca cluster	2020-03-30 17:01:38 +02:00
MaxUlysse	db2dd4458b	Merge remote-tracking branch 'upstream/master' into UPPMAX	2020-03-30 16:41:08 +02:00
MaxUlysse	8b570507cd	update s	2020-03-30 16:40:11 +02:00
Gisela Gabernet	15574ab849	Merge pull request #143 from ggabernet/master ... add cfc_dev profile	2020-03-23 17:46:34 +01:00
ggabernet	fa01e6c5c1	add cfc_dev to test yml	2020-03-23 17:27:36 +01:00
ggabernet	d02e2b8a36	add cfc_dev and warning for binac and cfc	2020-03-23 17:22:02 +01:00
ggabernet	c81f693f73	add cfc_dev config	2020-03-23 17:16:34 +01:00
Olga Botvinnik	f414b4c52d	Merge pull request #142 from nf-core/olgabot-patch-1 ... Add AaegL5.0 genome to czbiohub_aws	2020-03-17 16:46:12 -07:00
Olga Botvinnik	52369ba6ad	Add AaegL5.0 config	2020-03-17 16:45:20 -07:00
Maxime Garcia	8b1835484e	Merge pull request #141 from nf-core/MaxUlysse-patch-1 ... Update munin.config	2020-03-12 17:31:09 +01:00
Maxime Garcia	123132d89a	Update munin.config ... fix typo	2020-03-12 17:23:55 +01:00
Phil Ewels	5a3bdcca5b	Merge pull request #139 from Emiller88/utd ... fix(ganymede): use singularity/2.4.5	2020-03-11 16:54:01 +00:00
Maxime Garcia	a3934c84e0	Merge pull request #140 from MaxUlysse/Munin ... Update Munin specific configs	2020-03-11 15:55:11 +01:00
Maxime Garcia	b6d52fdb89	Update conf/pipeline/sarek/munin.config	2020-03-11 15:48:29 +01:00
Maxime Garcia	0f34d757a9	Update munin.config	2020-03-11 15:48:17 +01:00
MaxUlysse	4a7f98a83b	update TOC	2020-03-11 15:41:58 +01:00
MaxUlysse	6be1716797	revert * to - changes	2020-03-11 15:39:36 +01:00
MaxUlysse	d4bea56f52	add munin/rnafusion specific docs + markdownlint	2020-03-11 14:23:23 +01:00
MaxUlysse	7c60096952	update docs for munin/sarek specific config	2020-03-11 14:17:24 +01:00
MaxUlysse	250035e71d	fix path to config files	2020-03-11 14:11:23 +01:00
MaxUlysse	d24a296a01	add munin/rnafusion specific config	2020-03-11 14:02:01 +01:00
MaxUlysse	dd1ddf864b	update sarek munin config	2020-03-11 14:01:28 +01:00