James Fellows Yates
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76fc461670
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Try new strategy for SGE/JAVA bs
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2021-08-04 10:14:56 +02:00 |
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Rogan Grant
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f793ffaace
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Updated iGenomes location
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2021-08-03 15:10:54 -05:00 |
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James A. Fellows Yates
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0c3428f5d1
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Merge pull request #263 from jfy133/master
eager @ eva
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2021-08-03 14:20:50 +02:00 |
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James A. Fellows Yates
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00491de038
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Update eva.config
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2021-08-03 13:54:14 +02:00 |
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Rogan Grant
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079258ebbb
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Minor text edits
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2021-07-29 11:38:40 -05:00 |
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Rogan Grant
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482478878d
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Added instructions for module loading
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2021-07-28 18:11:10 -05:00 |
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Rogan Grant
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24a2949fe2
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Had executor options in wrong spot :(
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2021-07-28 18:05:45 -05:00 |
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Rogan Grant
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6862fb8bfd
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testing ternary operatory
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2021-07-28 18:01:03 -05:00 |
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Rogan Grant
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bcc69fe83c
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Enable use of himem nodes
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2021-07-28 17:54:51 -05:00 |
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Rogan Grant
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ac11ca5568
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Remove echo used for testing
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2021-07-28 16:48:08 -05:00 |
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Rogan Grant
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3dd4f16d09
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Added indicator for testing
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2021-07-28 14:01:12 -05:00 |
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Rogan Grant
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09ed4d54b9
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Just make command a single line for simplicity
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2021-07-28 13:52:26 -05:00 |
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Rogan Grant
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09e0ea2674
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typo
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2021-07-28 13:46:40 -05:00 |
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Rogan Grant
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e1e0810d1b
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Clean up module loading script
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2021-07-28 13:44:48 -05:00 |
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Rogan Grant
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e2c566ed13
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Testing "automounts"
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2021-07-28 13:38:06 -05:00 |
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Rogan Grant
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f104250ff4
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Removed comment
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2021-07-28 13:34:49 -05:00 |
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Rogan Grant
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9df267a192
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Merged duplicate params
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2021-07-28 13:27:17 -05:00 |
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Rogan Grant
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ff6823ec1d
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removed unnecessary space
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2021-07-28 13:22:52 -05:00 |
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Rogan Grant
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9957e9eea1
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Version 1 of custom config with queue-switching for long jobs and module loading
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2021-07-28 13:11:02 -05:00 |
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Rogan Grant
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30ca555060
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Added nu_genomics to list
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2021-07-28 13:10:35 -05:00 |
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Rogan Grant
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e28a836702
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Added nu_genomics to list
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2021-07-28 13:10:18 -05:00 |
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Rogan Grant
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40170632aa
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First draft of markdown file, with instructions for installing nextflow and getting access
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2021-07-28 13:04:32 -05:00 |
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Rogan Grant
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2af0f4a774
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Added link to NU Genomics markdown
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2021-07-28 13:03:59 -05:00 |
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BarryDigby
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732c3cfe7d
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Merge pull request #262 from BarryDigby/master
NUIG config
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2021-07-28 13:00:50 +01:00 |
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Barry digby
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2c6b9176e2
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Merge branch 'master' of github.com:BarryDigby/configs
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2021-07-28 12:19:45 +01:00 |
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Barry digby
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ef6b13e377
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tabs rm
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2021-07-28 12:19:11 +01:00 |
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BarryDigby
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871b82f6f4
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Merge branch 'master' into master
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2021-07-28 12:16:16 +01:00 |
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Barry digby
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f62298d211
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w
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2021-07-28 11:44:06 +01:00 |
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Barry digby
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2fc8082aad
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w
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2021-07-28 11:43:39 +01:00 |
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Barry digby
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11cb6cc70d
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w
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2021-07-28 11:41:42 +01:00 |
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Barry digby
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380adf083a
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markdowwwwn
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2021-07-28 11:41:16 +01:00 |
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Maxime U. Garcia
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f82da1de71
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Merge pull request #261 from maxulysse/master_cambridge
fix: closes #260 + sort some lines
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2021-07-28 10:10:39 +02:00 |
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Barry digby
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70b2644c9a
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.
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2021-07-27 17:39:37 +01:00 |
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Barry digby
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2a06d956b3
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mdlint so picky : (
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2021-07-27 17:18:42 +01:00 |
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Barry digby
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b7c7115f1e
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lll
Merge branch 'nf-core-master'
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2021-07-27 17:13:58 +01:00 |
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Barry digby
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2b6e80561a
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Merge branch 'master' of https://github.com/nf-core/configs into
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2021-07-27 17:13:17 +01:00 |
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Barry digby
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4f962260d0
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s
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2021-07-27 17:08:53 +01:00 |
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Barry digby
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04c0da5a2f
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nuig confg (lugh)
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2021-07-27 17:05:27 +01:00 |
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MaxUlysse
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895c4eb610
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fix: closes #260 + sort some lines
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2021-07-27 16:35:19 +02:00 |
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ameynert
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937538d160
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Fix typo in file path
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2021-07-23 10:18:24 +01:00 |
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ameynert
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5c56e13747
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Fix typo
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2021-07-23 10:18:02 +01:00 |
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ameynert
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3bfaf65450
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Fixed trailing space
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2021-07-23 09:39:32 +01:00 |
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ameynert
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26183d9883
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Updated eddie documentation for singularity cache directory
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2021-07-23 09:35:15 +01:00 |
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ameynert
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238d6e5e96
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Added cacheDir to singularity in eddie profile
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2021-07-23 09:33:02 +01:00 |
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Harshil Patel
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6ede44b221
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Merge pull request #258 from ameynert/master
Update eddie config docs & added viralrecon config
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2021-07-22 15:14:54 +01:00 |
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ameynert
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2112168420
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Set BLASTDB_LMDB_MAP_SIZE
This environment variable needs to be set in order to prevent memory allocation errors in the MAKEBLASTDB process.
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2021-07-22 15:07:19 +01:00 |
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ameynert
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17fad9dd15
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Update pipeline/viralrecon.config
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-07-21 12:27:09 +01:00 |
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ameynert
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d9abb7d59f
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Added eddie config to viralrecon
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2021-07-21 12:23:47 +01:00 |
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ameynert
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5224eb5574
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Updated resources folder & institute name
Local resources folder was re-organized & re-named BioinformaticsResources. Added note about viralrecon & atacseq pipeline-specific config. IGMM name-changed recently; updated to IGC.
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2021-07-21 12:15:17 +01:00 |
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ameynert
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4ceb369af5
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eddie.config for viralrecon pipeline
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2021-07-21 12:10:43 +01:00 |
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