Emil
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29fa08c434
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Adds _JAVA_OPTIONS to singularity whitelist
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2022-05-30 11:07:24 +02:00 |
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Emil
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19497a4183
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Makes qualimap fix work for most memory amounts
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2022-05-30 11:06:48 +02:00 |
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Emil
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e938f3606f
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Removes the new SGE clusterOptions for now
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2022-05-05 14:09:45 +02:00 |
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Emil
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8b9744723c
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Fixes hasta java memory issues
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2022-05-04 14:13:24 +02:00 |
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Thiseas C. Lamnidis
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a543a3ebc6
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Merge pull request #369 from TCLamnidis/master
missing bracket in eager eva.config
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2022-05-04 13:14:10 +02:00 |
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Thiseas C. Lamnidis
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209601f782
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missing bracket
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2022-05-04 13:08:13 +02:00 |
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James A. Fellows Yates
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c85342a9c9
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Merge pull request #368 from TCLamnidis/master
Update eva.config
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2022-05-04 12:32:04 +02:00 |
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Thiseas C. Lamnidis
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a42c4344ad
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Exclude bionode 06 for software versions
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2022-05-03 18:30:42 +02:00 |
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Thiseas C. Lamnidis
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08edd19d67
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Merge pull request #1 from TCLamnidis/TCLamnidis-patch-1
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2022-05-03 17:46:54 +02:00 |
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Thiseas C. Lamnidis
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79e227aa4e
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Update eva.config
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2022-05-03 16:42:21 +02:00 |
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Thiseas C. Lamnidis
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085726d081
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Update eva.config
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2022-05-03 16:36:05 +02:00 |
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Thiseas C. Lamnidis
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4592969613
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memory for get_software_versions in MB.
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2022-05-03 16:30:04 +02:00 |
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Thiseas C. Lamnidis
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79ad571319
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Update eva.config
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2022-05-03 16:25:48 +02:00 |
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Thiseas C. Lamnidis
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04226692fe
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Update eva.config
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2022-05-03 16:21:35 +02:00 |
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Thiseas C. Lamnidis
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57095fe79f
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Update eva.config
Set max heap size for java jobs in `get_software_versions`.
Limited OpenBLAS threading for python jobs that use numpy/pandas.
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2022-05-03 16:12:20 +02:00 |
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James A. Fellows Yates
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d1c1b467c1
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Merge pull request #366 from jfy133/master
Add more memory to get_software_versions for eva @ EAGER
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2022-05-02 14:54:26 +02:00 |
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James A. Fellows Yates
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b5d9b79377
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Merge branch 'nf-core:master' into master
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2022-05-02 13:59:18 +02:00 |
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James A. Fellows Yates
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bf658abc77
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Update eva.config
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2022-05-02 13:59:13 +02:00 |
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James Fellows Yates
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4885b672b1
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Prettier
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2022-04-25 11:46:32 +02:00 |
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James A. Fellows Yates
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b2d6fb6f5e
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Merge pull request #365 from rajewski/master
Cedars-Sinai HPC
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2022-04-25 10:44:33 +02:00 |
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Alex Rajewski
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d261b3df78
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add cedars-sinai
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2022-04-22 10:29:22 -07:00 |
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Alex Rajewski
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aa2c3e256b
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add cedars-sinai
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2022-04-22 10:27:50 -07:00 |
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Alex Rajewski
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c60d73b565
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add Cedars-Sinai HPC
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2022-04-22 10:26:32 -07:00 |
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Alex Rajewski
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7d6482c652
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Merge pull request #1 from rajewski/patch-1
usage notes
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2022-04-22 10:24:33 -07:00 |
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Alex Rajewski
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766eb450be
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usage notes
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2022-04-22 10:23:19 -07:00 |
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Alex Rajewski
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69d1a14894
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basic Cedars-Sinai HPC config file
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2022-04-22 10:17:13 -07:00 |
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James A. Fellows Yates
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c1425c6c01
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Merge pull request #364 from jfy133/eva-update
Update eager @ eva.config to allow retry on post-processing FASTQ
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2022-04-22 11:47:10 +02:00 |
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James A. Fellows Yates
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a086878c0b
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Update eva.config
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2022-04-22 10:47:04 +02:00 |
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Maxime U. Garcia
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e9d93d62e0
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Merge pull request #362 from nf-core/praveenraj2018-patch-1
Update: sentieon version
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2022-04-07 12:52:33 +02:00 |
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Praveen Raj S
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edaad1cd18
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Update: sentieon version
Sentieon version has been updated to 202112.02.
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2022-04-07 12:36:01 +02:00 |
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James A. Fellows Yates
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d49b21efdc
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Merge pull request #361 from jfy133/master
Re-add accidently removed BWA bionode exclusions EAGER @ EVA
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2022-03-31 14:11:54 +02:00 |
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James A. Fellows Yates
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44238471cf
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Update eva.config
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2022-03-31 13:12:50 +02:00 |
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James A. Fellows Yates
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f172cce8b2
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Merge pull request #360 from jfy133/master
Re-add bash bin specification for EVA
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2022-03-31 12:58:06 +02:00 |
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James Fellows Yates
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2277b541a3
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Re-add bash bin specification
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2022-03-31 11:06:53 +02:00 |
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James A. Fellows Yates
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7cad02d327
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Merge pull request #359 from jfy133/fix-eva
Remove -S /bin/bash in clusteroptions for EVA
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2022-03-29 13:51:41 +02:00 |
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James A. Fellows Yates
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8ad4ddac6a
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Merge branch 'master' into fix-eva
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2022-03-29 12:50:54 +02:00 |
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James Fellows Yates
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3d2a612b39
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Remove setting of bash in clusterOotions
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2022-03-29 12:48:37 +02:00 |
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James A. Fellows Yates
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576351219a
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Update eva.config
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2022-03-29 12:47:46 +02:00 |
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James A. Fellows Yates
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9e502025b9
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Merge pull request #358 from aidaanva/master
Update eva.config bigmem.q
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2022-03-28 09:11:18 +02:00 |
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James A. Fellows Yates
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b0c9ac9be8
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Update eva.md
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2022-03-28 09:02:26 +02:00 |
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Phil Ewels
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1f872aea87
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Merge pull request #357 from mahesh-panchal/uppmax-hostname-fix
Execute sinfo with bash shell
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2022-03-25 15:31:09 +01:00 |
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Mahesh Binzer-Panchal
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3a7f7f431e
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Execute sinfo with bash shell
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2022-03-25 13:58:37 +00:00 |
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Aida Andrades Valtueña
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b9da0b4f00
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Update eva.config
Update eva.config to send big memory jobs (>700G) to the bigmem queue
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2022-03-25 09:36:29 +01:00 |
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Phil Ewels
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7d72e8d94b
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Merge pull request #356 from b97pla/uppmax_miarka_config
removed process-specific requirements for sarek, request miarka high-…
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2022-03-24 14:33:06 +01:00 |
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b97pla
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9a6cdfc21e
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removed process-specific requirements for sarek, request miarka high-mem node
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2022-03-24 14:25:43 +01:00 |
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Phil Ewels
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80ec4485b6
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Merge pull request #355 from b97pla/uppmax_miarka_config
added requirements for uppmax cluster miarka
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2022-03-23 16:56:44 +01:00 |
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b97pla
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5466d927f1
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added requirements for uppmax cluster miarka
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2022-03-23 15:29:40 +01:00 |
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Phil Ewels
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2c18f8c5da
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Merge pull request #354 from Emiller88/prettier
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2022-03-23 12:31:41 +01:00 |
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Edmund Miller
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590045be31
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ci: Run linting only once
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2022-03-21 19:23:29 -05:00 |
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Edmund Miller
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ac6c08fbf4
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style: yaml => yml
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2022-03-21 19:23:29 -05:00 |
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