millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-25 09:19:56 +00:00
Code Issues Releases Packages Activity
1728 commits 4 branches 0 tags 1.9 MiB
Commit graph

1728 commits

This branch
This branch
All branches
Author SHA1 Message Date
Combiz Khozoie
a61992d144 Added institutional configs for Imperial and Imperial MEDBIO. Added institutional pipeline configs for scflow for Imperial and Imperial MEDBIO 2020-12-18 10:21:26 +00:00
Alexander Peltzer
65e2ff56d8
Merge pull request #195 from marcel-keller/patch-1 
change of directory for conda environments
 2020-12-09 14:35:00 +01:00
marcel-keller
c9ceaff3b3
change of directory for conda environments 
change of directory due to recent changes in our infrastructure
 2020-12-09 15:11:21 +02:00
Maxime Garcia
2fb205264e
Merge pull request #192 from arontommi/dev 
Documentation for Bianca
 2020-12-09 11:09:23 +01:00
emnilsson
8cc2fc5ecb
Merge pull request #193 from emnilsson/master 
Modified ampliseq-specific uppmax-config
 2020-12-02 13:40:43 +01:00
Alexander Peltzer
99985c658f
Merge pull request #194 from marcel-keller/ebc 
Update ebc.config
 2020-11-26 14:12:33 +01:00
marcel-keller
5590a9743a
Update ebc.config 
queueSize to 64
 2020-11-26 15:05:25 +02:00
arontommi
ac108379cd trailing spaces 2020-11-26 13:58:16 +01:00
arontommi
c2c7265518 fix linting errors 2020-11-26 13:47:47 +01:00
Emelie Nilsso
7095101652 Merge branch 'master' of https://github.com/nf-core/configs 2020-11-26 13:43:42 +01:00
Emelie Nilsso
febf38dd8e Removed an old process so that only relevant processes are included 2020-11-26 13:38:47 +01:00
arontommi
6480aef1db typo 2020-11-26 11:41:33 +01:00
arontommi
f84fbb8f89 typo 2020-11-26 11:39:51 +01:00
arontommi
e6bb7a4852 capital names 2020-11-26 11:37:59 +01:00
arontommi
5726ef3456 typo 2020-11-26 11:26:08 +01:00
arontommi
06469901fe typo 2020-11-26 11:24:29 +01:00
arontommi
ebf754bf43 documentation for bianca 2020-11-26 09:53:51 +01:00
Phil Ewels
d134286487
Merge pull request #190 from ewels/uppmax-docs 
Better UPPMAX docs
 2020-11-26 01:43:47 +01:00
Phil Ewels
e96455e180
Update docs/uppmax.md 2020-11-26 01:43:09 +01:00
Phil Ewels
d9a8009662 Better UPPMAX docs 2020-11-25 22:45:16 +01:00
Emelie Nilsso
d61ed01d2d Updated process names according to ampliseq main.nf 2020-11-25 17:50:30 +01:00
Emelie Nilsso
37e7cfae2c Removed unnecessary code that was used to troubleshoot 2020-11-24 07:14:23 +01:00
Emelie Nilsso
cd59bba83e Merge branch 'master' of https://github.com/nf-core/configs 2020-11-24 07:10:05 +01:00
Emelie Nilsso
c47088cda2 Merge remote-tracking branch 'origin' 2020-11-23 21:34:08 +01:00
Emelie Nilsso
2ea06ffab8 Modified uppmax and ampliseq specific config to fit with the divided preparation of the database 2020-11-23 21:20:36 +01:00
James A. Fellows Yates
f3c7b36e3d
Merge pull request #189 from nf-core/TCLamnidis-patch-1 
Move sdag queue specification block in sdag profile
 2020-11-18 13:16:54 +01:00
Thiseas C. Lamnidis
71d1ff2226
Add params block to sdag queue 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2020-11-18 13:04:46 +01:00
Thiseas C. Lamnidis
da781907f2
Move sdag queue specification block in sdag profile 2020-11-17 19:45:06 +01:00
Harshil Patel
be9cb33ac1
Merge pull request #188 from andrewfrank/patch-1 
Fix parameters in google.md
 2020-11-12 17:12:41 +00:00
Andrew Frank
d70fc2605a
Fix parameters in google.md 
Change parameters from hyphens to underscores to accurately reflect google.config
 2020-11-12 11:52:58 -05:00
James A. Fellows Yates
4dfacc1894
Merge pull request #13 from nf-core/master 
Sync latest changes
 2020-11-10 16:34:16 +01:00
Maxime Borry
c95fd9d52f
Merge pull request #186 from jfy133/shh-singularity-runoptions 
Remove custom singularity runOptions from SHH config
 2020-11-10 15:39:40 +01:00
James A. Fellows Yates
9d4d682867
Update shh.config 2020-11-10 15:14:03 +01:00
Gisela Gabernet Garriga
885f0ce5f6 awsbatch config update 2020-11-09 22:41:38 +01:00
Maxime Garcia
3cc3445549
Merge pull request #183 from abims-sbr/abims 
Add ABiMS
 2020-10-23 09:57:20 +02:00
lecorguille
e3d733d87e Add ABiMS - fix lint 2020-10-23 09:29:54 +02:00
lecorguille
4d03f72c78 Add ABiMS - last bits of doc 2020-10-23 09:27:12 +02:00
lecorguille
6ee6b7bf56 Add ABiMS - remove a useless link 2020-10-23 00:12:02 +02:00
lecorguille
c974972585 Add ABiMS - side files 2020-10-23 00:12:02 +02:00
lecorguille
23ba1c58b1 Add ABiMS - NXF_SINGULARITY_CACHEDIR 2020-10-23 00:11:58 +02:00
lecorguille
90d1f9072b Add ABiMS - autoMounts = false 2020-10-22 18:18:55 +02:00
lecorguille
f21d16b24f Add ABiMS - fix lint 2020-10-22 17:47:25 +02:00
lecorguille
a63ca751ee Add ABiMS 2020-10-22 16:57:41 +02:00
James A. Fellows Yates
804f53c58c
Merge pull request #178 from jfy133/master 
Add Max Planck Computing and Data Facility Cobra/Raven Clusters
 2020-10-22 13:34:11 +02:00
James A. Fellows Yates
7088ed196f
Update mpcdf.md 2020-10-22 11:08:29 +02:00
James A. Fellows Yates
3995057d7f
Update mpcdf.config 2020-10-22 10:42:46 +02:00
James A. Fellows Yates
0d6e269322
Update mpcdf.md 2020-10-15 14:24:08 +02:00
James A. Fellows Yates
05deeca2d6
Update mpcdf.config 2020-10-15 14:22:35 +02:00
James A. Fellows Yates
2c2d23ac26
Merge pull request #181 from nf-core/shh-patch 
Update SHH profile to reduce number of parallel jobs
 2020-09-29 14:24:12 +02:00
James A. Fellows Yates
e26c22b2f1
Update shh.config 2020-09-29 14:03:35 +02:00