Matthieu Muffato
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1ee20f0bb0
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2 cores should be enough for the nextflow manager itself
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2022-07-20 14:35:22 +01:00 |
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Matthieu Muffato
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60dc451569
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The oversubscribed queue is recommended for workflow managers
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2022-07-20 14:34:59 +01:00 |
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Matthieu Muffato
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1f1a9ac5f0
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ISG provide the module, not the pathogen informatics team
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2022-07-20 14:34:25 +01:00 |
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Matthieu Muffato
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2aad355fbf
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The config doesn't mandate Singularity any more (Conda is fine too)
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2022-07-20 14:32:43 +01:00 |
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Priyanka Surana
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fd87fbcb9d
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Sanger profile update
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2022-07-20 13:22:51 +01:00 |
|
Priyanka Surana
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58508c4fbc
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Sanger profile update
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2022-07-20 13:14:42 +01:00 |
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Maxime U. Garcia
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a02bd46617
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Merge pull request #398 from nvnieuwk/lower-submission-rate-for-vsc_ugent
lower submission rate for vsc_ugent
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2022-07-14 16:03:46 +02:00 |
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Nicolas Vannieuwkerke
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f40825ac14
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lower submission rate for vsc_ugent
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2022-07-14 15:50:50 +02:00 |
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Alexander Peltzer
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c6d59bf633
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Merge pull request #396 from drpatelh/nextclade
Update default Nextclade dataset to 2022-06-14T12:00:00Z
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2022-07-12 10:19:15 +02:00 |
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Erik Danielsson
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5d7789792f
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Add CITATION.cff and update .editorconfig
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2022-07-12 09:57:20 +02:00 |
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Harshil Patel
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2ab126fa4d
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Update default Nextclade dataset to 2022-06-14T12:00:00Z
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2022-07-11 18:28:41 +01:00 |
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qlr900
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ff55ec67b4
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update to current java+nextflow module combination
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2022-07-07 14:30:48 +02:00 |
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Gwenna Breton
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6b9cdc8ef3
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Added info about Sentieon singularities
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2022-07-07 14:24:15 +02:00 |
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Gwenna Breton
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4538e8aa36
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Update medair.config
- added path to singularity image for Sentieon
- harmonized alignment
|
2022-07-07 13:41:42 +02:00 |
|
Gwenna Breton
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746db14d47
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Update medair.md
- updated text about storing singularity images
- updated text about using profiles
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2022-07-07 11:42:46 +02:00 |
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qlr900
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d19d6c0ae0
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update wording
|
2022-07-06 16:19:16 +02:00 |
|
qlr900
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d2b6b07de8
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remove comments for mnaseseq
|
2022-07-06 14:18:31 +02:00 |
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Gwennid
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b6e2d03a02
|
Added Singularity cache dir
|
2022-07-06 13:59:35 +02:00 |
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qlr900
|
4f98876429
|
add export to NXF_SINGULARITY_CACHEDIR
|
2022-07-06 13:35:10 +02:00 |
|
qlr900
|
6939c6f003
|
lower queueSize to 5
|
2022-07-06 13:34:18 +02:00 |
|
qlr900
|
f45b8645f6
|
update wording
|
2022-07-06 13:05:13 +02:00 |
|
qlr900
|
8a781b6bb2
|
modify alternative module load
|
2022-07-06 12:54:07 +02:00 |
|
qlr900
|
7ac08a1015
|
add alternative module load
|
2022-07-06 12:42:14 +02:00 |
|
qlr900
|
49e756d1bc
|
fix typos
|
2022-07-06 12:39:55 +02:00 |
|
Gwennid
|
96fd2bf217
|
Fixed formatting
|
2022-07-06 11:42:05 +02:00 |
|
Gwenna Breton
|
1d13dd9fbc
|
Changed where cgg-it is mentioned
|
2022-07-06 11:24:03 +02:00 |
|
Gwenna Breton
|
235097e58e
|
Addressed review comments
- removed mention of iGenomes
- clarified whom to contact for support
|
2022-07-06 11:20:59 +02:00 |
|
Gwenna Breton
|
1d7a34b11f
|
Removed comment about internal doc
|
2022-07-06 11:17:58 +02:00 |
|
Gwenna Breton
|
b202ad70ac
|
Removed mention of specific module versions
|
2022-07-06 11:16:38 +02:00 |
|
qlr900
|
56026c5ac4
|
remove beforeScript
|
2022-07-06 09:52:51 +02:00 |
|
qlr900
|
7d59eabd91
|
simplify guideline
|
2022-07-06 09:52:06 +02:00 |
|
qlr900
|
941a34406a
|
update ku_sund_dangpu.md
|
2022-07-05 12:06:19 +02:00 |
|
qlr900
|
8ba35f721c
|
add ku_sund_dangpu.md
|
2022-07-05 12:05:10 +02:00 |
|
qlr900
|
65d7080921
|
add conf/ku_sund_dangpu.config
|
2022-07-05 11:17:49 +02:00 |
|
James A. Fellows Yates
|
08435ca300
|
Merge pull request #382 from jfy133/eva-java-correction
EAGER @ EVA Further Java workarounds
|
2022-07-04 13:42:13 +02:00 |
|
James A. Fellows Yates
|
a141ff626b
|
Merge branch 'master' into eva-java-correction
|
2022-07-04 13:35:50 +02:00 |
|
Gwenna Breton
|
b3a6e199ca
|
Merge branch 'nf-core:master' into medair
|
2022-07-01 17:02:56 +02:00 |
|
Maxime U. Garcia
|
49e779e337
|
Merge pull request #394 from nvnieuwk/vsc-ugent-fix
Vsc ugent fix for job-intensive pipelines
|
2022-07-01 16:26:41 +02:00 |
|
Nicolas Vannieuwkerke
|
8a74c517d4
|
Merge branch 'vsc-ugent-fix' of github.com:nvnieuwk/configs into vsc-ugent-fix
|
2022-07-01 16:16:22 +02:00 |
|
Nicolas Vannieuwkerke
|
1e34595280
|
removed queue size limit
|
2022-07-01 16:16:18 +02:00 |
|
nvnieuwk
|
5ff845cde7
|
Merge branch 'master' into vsc-ugent-fix
|
2022-07-01 16:10:45 +02:00 |
|
Nicolas Vannieuwkerke
|
fa949a069e
|
added queuesize
|
2022-07-01 16:01:19 +02:00 |
|
Nicolas Vannieuwkerke
|
abfa3f47f4
|
lowered the job submit rate of vsc_ugent
|
2022-07-01 15:55:44 +02:00 |
|
Gwenna Breton
|
84174043e4
|
Added details for nf-core pipelines download
|
2022-06-30 16:41:50 +02:00 |
|
Gwenna Breton
|
2398110ea5
|
Added info on dowloading pipelines
|
2022-06-30 14:24:17 +02:00 |
|
Gwenna Breton
|
22f73b06f9
|
Updated info about the different profiles
|
2022-06-30 12:00:05 +02:00 |
|
Gwenna Breton
|
77dba3256a
|
Add profile name to test scope
|
2022-06-30 11:53:02 +02:00 |
|
Gwenna Breton
|
abccece8a3
|
Added medair config file to the list
|
2022-06-30 11:49:47 +02:00 |
|
Gwenna Breton
|
77017e877a
|
Added medair configuration docs to the list
|
2022-06-30 11:48:34 +02:00 |
|
Gwenna Breton
|
f718025e79
|
Added doc file for medair
|
2022-06-30 11:43:04 +02:00 |
|