millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 08:29:54 +00:00
Code Issues Releases Packages Activity
479 commits 4 branches 0 tags 1.9 MiB
Commit graph

479 commits

This branch
This branch
All branches
Author SHA1 Message Date
James A. Fellows Yates
435a5892ea
Updated docs corresponding to 638758423a 2019-12-21 20:59:25 +01:00
James A. Fellows Yates
638758423a
Restricts MALT re-tries and hardcodes resources so cannot go above SDAG max 2019-12-21 20:55:54 +01:00
James A. Fellows Yates
5632a0631a
Merge pull request #8 from nf-core/master 
Syncing
 2019-12-21 20:51:38 +01:00
Harshil Patel
01b7357d1d
Merge pull request #112 from drpatelh/master 
Change iGenomes path after fullish sync
 2019-12-18 11:12:27 +00:00
drpatelh
bcb8950c2f Change URL to website 2019-12-18 10:57:12 +00:00
drpatelh
be5ed21269 Update docs 2019-12-18 10:54:31 +00:00
drpatelh
67c231d05c Change igenomes path 2019-12-18 10:54:23 +00:00
Harshil Patel
aadeea0ab9
Merge pull request #111 from drpatelh/master 
Update awsbatch.config
 2019-12-12 14:32:59 +00:00
drpatelh
089b5b8e3b Update config 2019-12-12 13:44:37 +00:00
drpatelh
0779d25255 Update docs 2019-12-12 13:02:51 +00:00
drpatelh
65c5668568 Update config 2019-12-12 13:02:44 +00:00
Maxime Garcia
d36172d4cf
Merge pull request #110 from MaxUlysse/MUNIN 
fix issue with withLabel selector
 2019-12-12 13:03:23 +01:00
MaxUlysse
2bf66514c5 fix issue with withLabel selector 2019-12-12 11:50:10 +01:00
Alexander Peltzer
a4fa95150c
Merge pull request #109 from apeltzer/master 
TZ env for binac
 2019-12-12 11:10:22 +01:00
Alexander Peltzer
ecc850fd83
Omit this in TOC 2019-12-11 16:13:15 +01:00
Alexander Peltzer
a6d08ed646
Adjust custom pipeline config for ampliseq on BINAC 2019-12-11 16:09:44 +01:00
Alexander Peltzer
49cd35918a
Remove whitespace 2019-12-11 15:59:58 +01:00
Alexander Peltzer
5e6981d0ee
Export TZ in binac config 2019-12-11 15:59:25 +01:00
Alexander Peltzer
271e20e306
Merge pull request #108 from nf-core/fix-env-binac 
Update envWhiteList for Binac Profile for testing purposes
 2019-12-11 14:31:22 +01:00
Alexander Peltzer
ac90acf470
Update envWhiteList for Binac Profile for testing purposes 
Add envWhitelist for TZ to fix https://github.com/nf-core/ampliseq/issues/114
 2019-12-11 14:26:57 +01:00
Alexander Peltzer
e429758e25
Merge pull request #107 from nf-core/pipelineconfigs_readme_update 
Update README to mention EAGER specific configs
 2019-12-10 12:19:26 +01:00
James A. Fellows Yates
71b47e3efa
Updated README to include EAGER specific configs 2019-12-10 11:39:24 +01:00
James A. Fellows Yates
09bc644dcf
Merge pull request #106 from jfy133/master 
Fixes shh eager-specific profile
 2019-12-06 20:02:59 +01:00
James A. Fellows Yates
0beb98696f
Merge branch 'master' into master 2019-12-06 19:31:24 +01:00
James A. Fellows Yates
8747be8120
More tweaks, nextflow appears to add a little extra? 2019-12-06 19:27:16 +01:00
James A. Fellows Yates
5c6760b2f0
Tweak back again 2019-12-06 19:25:07 +01:00
James A. Fellows Yates
46f6d20a77
Put parameters back to correct levels 2019-12-06 19:13:29 +01:00
Phil Ewels
4b0fd12752
Merge pull request #105 from nf-core/jfy133-patch-1 
Wrong bracket typo fix -.-
 2019-12-06 19:12:50 +01:00
James A. Fellows Yates
18931763fa
Add space? 2019-12-06 19:11:08 +01:00
James A. Fellows Yates
f59443daf0
Update shh.config 2019-12-06 19:09:20 +01:00
James A. Fellows Yates
1ab1370872
Try to make resources satisfiable 2019-12-06 19:06:05 +01:00
James A. Fellows Yates
6e596d1730
Fix stupid wrong bracket typo -.- 2019-12-06 18:37:39 +01:00
James A. Fellows Yates
b28e1a0905
Wrong bracket typo fix -.- 2019-12-06 18:34:18 +01:00
Alexander Peltzer
1f7940c2ee
Merge pull request #104 from jfy133/master 
Attempt to fix process specific configs with pipeline specific configs
 2019-12-06 17:16:37 +01:00
jfy133
e8b4675692 Cleanup and tweaking 2019-12-06 13:17:31 +01:00
Maxime Garcia
9497b78149
Merge pull request #100 from MaxUlysse/UPPMAX 
Improve UPPMAX configs
 2019-12-06 10:52:44 +01:00
Maxime Garcia
79528de92f
Update docs/uppmax.md 
Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
 2019-12-06 10:47:09 +01:00
Maxime Garcia
14864bb80b
Update conf/uppmax.config 2019-12-06 10:31:56 +01:00
Alexander Peltzer
da547b4ce3
Merge pull request #102 from phue/cbe_singularity 
cbe: load singularity/3.4.1
 2019-12-06 10:21:55 +01:00
phue
fa777180e6 cbe: map hostname 2019-12-05 23:46:25 +01:00
James A. Fellows Yates
0033b74e4e
Update shh.config 2019-12-05 18:08:39 +01:00
James A. Fellows Yates
dc0f1dfb40
Update shh.config 2019-12-05 17:58:49 +01:00
James A. Fellows Yates
b1a8b45aa0
Maybe typo? 2019-12-05 17:52:53 +01:00
James A. Fellows Yates
ab6c5f05ac
Merge pull request #7 from nf-core/master 
syncing
 2019-12-05 17:37:17 +01:00
James A. Fellows Yates
0467b44f21
Merge pull request #103 from jfy133/master 
EAGER Pipeline specific config for SHH
 2019-12-05 17:21:18 +01:00
jfy133
1650080b6e Linting 2019-12-05 17:03:07 +01:00
jfy133
731372dac2 Added SHH specific EAGER configuration 2019-12-05 17:01:10 +01:00
James A. Fellows Yates
0a3821ce78
Merge pull request #6 from nf-core/master 
Syncing
 2019-12-05 16:14:52 +01:00
phue
381c60e7b7 cbe: load singularity/3.4.1 2019-12-05 16:06:32 +01:00
MaxUlysse
a63ec24626 Merge branch 'UPPMAX' of github.com:MaxUlysse/nf-core_configs into UPPMAX 2019-12-05 15:18:04 +01:00