Barry digby
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2fc8082aad
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w
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2021-07-28 11:43:39 +01:00 |
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Barry digby
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11cb6cc70d
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w
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2021-07-28 11:41:42 +01:00 |
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Barry digby
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380adf083a
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markdowwwwn
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2021-07-28 11:41:16 +01:00 |
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Barry digby
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2a06d956b3
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mdlint so picky : (
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2021-07-27 17:18:42 +01:00 |
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Barry digby
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2b6e80561a
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Merge branch 'master' of https://github.com/nf-core/configs into
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2021-07-27 17:13:17 +01:00 |
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Barry digby
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04c0da5a2f
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nuig confg (lugh)
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2021-07-27 17:05:27 +01:00 |
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ameynert
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5224eb5574
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Updated resources folder & institute name
Local resources folder was re-organized & re-named BioinformaticsResources. Added note about viralrecon & atacseq pipeline-specific config. IGMM name-changed recently; updated to IGC.
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2021-07-21 12:15:17 +01:00 |
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Maxime U. Garcia
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30e058abf0
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Merge branch 'master' into master_kraken
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2021-07-20 09:26:56 +02:00 |
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Gisela Gabernet
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e2088a008d
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Merge branch 'master' into master
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2021-07-03 12:24:42 +02:00 |
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ggabernet
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ee2e8392ab
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add aws_tower profile
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2021-07-03 12:17:21 +02:00 |
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Edmund Miller
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21e1037e0c
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docs(sysbio): Add rnaseq specific docs
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2021-06-17 09:18:45 -05:00 |
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Edmund Miller
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41ae99d34a
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feat(sysbio): Add cleanup
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2021-06-17 08:17:55 -05:00 |
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Edmund Miller
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87c8e346e0
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fix(sysbio): Change filetype
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2021-06-17 08:14:48 -05:00 |
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Edmund Miller
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2a958f5ce3
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docs: Add sysbio
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2021-06-16 21:19:38 -05:00 |
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ikeller
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af1e57027d
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edit config and readme
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2021-05-19 09:46:07 +02:00 |
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Barry digby
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24a4119e43
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memory test
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2021-04-29 14:24:57 +01:00 |
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Barry digby
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8340e89768
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nuig.config first commit
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2021-04-28 17:28:01 +01:00 |
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Alexander Peltzer
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c12c373969
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Merge pull request #235 from aunderwo/cambridge
Add Cambridge University HPC config
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2021-04-25 10:40:56 +02:00 |
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Anthony Underwood
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982d1a8f2a
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Fix markdown linting
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2021-04-22 16:41:05 +01:00 |
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Anthony Underwood
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29dcc160e3
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Create cambridge.md
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2021-04-22 16:04:29 +01:00 |
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Anthony Underwood
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3e8f9b3d4e
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Remove blank lines
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2021-04-22 15:57:09 +01:00 |
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Anthony Underwood
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f414446a88
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Add info on how to load Singularity into your path
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2021-04-22 15:38:36 +01:00 |
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Anthony Underwood
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b16b011bcc
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Add ~/bin as recommended location for nextflow executable
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2021-04-22 12:02:11 +01:00 |
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Anthony Underwood
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cc18d213dc
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Update sanger.md
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2021-04-21 20:24:08 +01:00 |
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Anthony Underwood
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40eb3e0201
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Update sanger.md
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2021-04-21 20:20:30 +01:00 |
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Anthony Underwood
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7163e8723d
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Create sanger.md
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2021-04-21 20:17:42 +01:00 |
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Maxime Garcia
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1548690ca6
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Update docs/uppmax.md
Co-authored-by: Pontus Freyhult <pontus_github@soua.net>
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2021-04-21 12:27:27 +02:00 |
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MaxUlysse
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bab9241243
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fix: markdownlint
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2021-04-21 11:51:14 +02:00 |
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MaxUlysse
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844246cc7d
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fix: clearer usage of module
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2021-04-21 11:28:58 +02:00 |
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MaxUlysse
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1a7ec56c33
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feat: more details
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2021-04-21 11:23:50 +02:00 |
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MaxUlysse
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c89877decc
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feat: use <PIPLEINE>
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2021-04-21 11:17:06 +02:00 |
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MaxUlysse
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658fa7ccda
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fix: markdownlint
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2021-04-21 11:08:16 +02:00 |
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Maxime Garcia
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79e3dd65a7
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Apply suggestions from code review
Co-authored-by: Pontus Freyhult <pontus_github@soua.net>
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2021-04-21 11:06:39 +02:00 |
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Maxime Garcia
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4eea06f0db
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Apply suggestions from code review
Co-authored-by: Pontus Freyhult <pontus_github@soua.net>
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2021-04-20 16:03:34 +02:00 |
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MaxUlysse
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1c1dd952fc
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fix: bullet list
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2021-04-20 15:58:51 +02:00 |
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Maxime Garcia
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e4d2ef0984
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Apply suggestions from code review
Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
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2021-04-20 15:53:54 +02:00 |
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MaxUlysse
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4930795cab
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feat: more complete docs
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2021-04-20 15:38:49 +02:00 |
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MaxUlysse
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10abca712b
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fix: first draft of bianca guide
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2021-04-16 17:01:58 +02:00 |
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James A. Fellows Yates
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12a4518803
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Markdown lint fix
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2021-04-15 22:29:15 +02:00 |
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James A. Fellows Yates
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0fc90586e0
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Update mpcdf.md
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2021-04-15 22:26:37 +02:00 |
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MaxUlysse
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3918e0aa9d
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feat: remove kraken profile
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2021-04-13 15:14:14 +02:00 |
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James A. Fellows Yates
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161c3a33d4
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Merge branch 'master' into eva
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2021-04-07 19:28:16 +02:00 |
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Alexander Peltzer
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91f50aad4e
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Merge pull request #221 from phue/biohpc_gen
Add BioHPC Genomics config
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2021-04-07 14:03:22 +02:00 |
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James Fellows Yates
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8dac4ca552
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Merge branch 'eva' of github.com:jfy133/configs into eva
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2021-04-06 17:53:32 +02:00 |
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James Fellows Yates
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60c66d93ac
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Markdown linting
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2021-04-06 17:53:27 +02:00 |
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James A. Fellows Yates
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832edaa450
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Merge branch 'master' into eva
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2021-04-06 17:51:46 +02:00 |
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James Fellows Yates
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be1d35840d
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Add EVA and EAGER@EVA
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2021-04-06 17:48:16 +02:00 |
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ameynert
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700776f759
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Change to shared Singularity cache
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2021-03-30 16:11:15 +01:00 |
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phue
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7c5a0871a3
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add note about required nextflow version
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2021-03-29 19:36:49 +02:00 |
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phue
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8fc60e2e70
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add config for biohpc_gen
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2021-03-29 19:25:58 +02:00 |
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Gisela Gabernet
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71a97ba316
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Merge pull request #185 from ggabernet/master
awsbatch config update
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2021-03-28 20:59:40 +02:00 |
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ameynert
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3a8e54f153
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Removed sneaky trailing whitespace.
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2021-03-24 13:58:10 +00:00 |
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ameynert
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a0d42f5153
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Fixed code blocks for markdown linting
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2021-03-24 13:55:31 +00:00 |
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Phil Ewels
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bfab371c94
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Merge branch 'master' into master
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2021-03-24 12:36:15 +01:00 |
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ameynert
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2a8ae2b214
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Update eddie.md
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2021-03-24 11:12:41 +00:00 |
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ameynert
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96fe6185a0
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IGMM-specific docs
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2021-03-24 11:01:41 +00:00 |
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Asaf Peer
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9b2d5bfead
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Merge pull request #216 from asafpr/master
Added JAX conf
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2021-03-24 03:31:14 -04:00 |
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ameynert
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791f3c95f3
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Pipeline specific configs moving to confs/pipeline
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2021-03-23 16:07:07 +00:00 |
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Alexander Peltzer
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5988c51361
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Merge pull request #211 from DoaneAS/master
Adding WCM.config for Weill Cornell Medicine cluster
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2021-03-23 14:58:27 +01:00 |
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Asaf Peer
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30c864e112
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added JAX conf
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2021-03-21 06:49:11 -04:00 |
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ameynert
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b48136a62e
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Added pipeline-specific config files
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2021-03-18 12:55:03 +00:00 |
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ameynert
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af6a6b1060
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Details on running on eddie
Removed Conda support, Singularity by default. Added login and screen session on wild west node options.
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2021-03-18 12:48:48 +00:00 |
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ameynert
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4ad6bb2bec
|
Singularity info
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2021-03-17 14:50:40 +00:00 |
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Noirot Céline
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e3216ccf79
|
typo
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2021-03-16 16:00:56 +01:00 |
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Noirot Céline
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cc17045914
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Add institution
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2021-03-16 15:58:29 +01:00 |
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Noirot Céline
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7e9f83ee81
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Add IFB config
|
2021-03-16 15:54:19 +01:00 |
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Ashley S Doane
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6343a7f87c
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Update wcm.md
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2021-03-11 14:01:07 -05:00 |
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Ashley S Doane
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d630bcfb6c
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Create wcm.md
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2021-03-11 13:59:55 -05:00 |
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ameynert
|
4c0111f598
|
Eddie profile documentation initial commit
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2021-03-04 14:46:58 +00:00 |
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James A. Fellows Yates
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0bac3691e3
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Create mpcdf.config
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2021-02-14 18:07:40 +01:00 |
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James Fellows Yates
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a78aac327d
|
Linting fixes
|
2021-02-14 17:58:50 +01:00 |
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James Fellows Yates
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537f52a640
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Add MPI-EVA profile
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2021-02-14 17:50:20 +01:00 |
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ggabernet
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0909708b97
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update with upstream
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2021-02-09 22:01:27 +01:00 |
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Charles Plessy
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1608b36dcf
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Institutional profile for Okinawa Institute of Science and Technology
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2021-02-02 17:40:10 +09:00 |
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James A. Fellows Yates
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c4604450d8
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Update seg_globe.md
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2021-01-21 13:04:12 +01:00 |
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Åshild J. Vågene
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bcd137225e
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Update and rename ceh.md to seg_globe.md
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2021-01-21 11:46:46 +01:00 |
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Åshild J. Vågene
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ef80452577
|
Update docs/ceh.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2021-01-21 11:16:46 +01:00 |
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James A. Fellows Yates
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2fd475c339
|
Fix some linting errors
|
2021-01-21 06:30:43 +01:00 |
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Åshild J. Vågene
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d108666950
|
Update ceh.md
|
2021-01-21 00:30:54 +01:00 |
|
Åshild J. Vågene
|
65831b73ef
|
Create ceh.md
|
2021-01-21 00:17:08 +01:00 |
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Combiz Khozoie
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a61992d144
|
Added institutional configs for Imperial and Imperial MEDBIO. Added institutional pipeline configs for scflow for Imperial and Imperial MEDBIO
|
2020-12-18 10:21:26 +00:00 |
|
arontommi
|
ac108379cd
|
trailing spaces
|
2020-11-26 13:58:16 +01:00 |
|
arontommi
|
c2c7265518
|
fix linting errors
|
2020-11-26 13:47:47 +01:00 |
|
arontommi
|
6480aef1db
|
typo
|
2020-11-26 11:41:33 +01:00 |
|
arontommi
|
f84fbb8f89
|
typo
|
2020-11-26 11:39:51 +01:00 |
|
arontommi
|
e6bb7a4852
|
capital names
|
2020-11-26 11:37:59 +01:00 |
|
arontommi
|
5726ef3456
|
typo
|
2020-11-26 11:26:08 +01:00 |
|
arontommi
|
06469901fe
|
typo
|
2020-11-26 11:24:29 +01:00 |
|
arontommi
|
ebf754bf43
|
documentation for bianca
|
2020-11-26 09:53:51 +01:00 |
|
Phil Ewels
|
e96455e180
|
Update docs/uppmax.md
|
2020-11-26 01:43:09 +01:00 |
|
Phil Ewels
|
d9a8009662
|
Better UPPMAX docs
|
2020-11-25 22:45:16 +01:00 |
|
Andrew Frank
|
d70fc2605a
|
Fix parameters in google.md
Change parameters from hyphens to underscores to accurately reflect google.config
|
2020-11-12 11:52:58 -05:00 |
|
Gisela Gabernet Garriga
|
885f0ce5f6
|
awsbatch config update
|
2020-11-09 22:41:38 +01:00 |
|
lecorguille
|
e3d733d87e
|
Add ABiMS - fix lint
|
2020-10-23 09:29:54 +02:00 |
|
lecorguille
|
4d03f72c78
|
Add ABiMS - last bits of doc
|
2020-10-23 09:27:12 +02:00 |
|
lecorguille
|
6ee6b7bf56
|
Add ABiMS - remove a useless link
|
2020-10-23 00:12:02 +02:00 |
|
lecorguille
|
23ba1c58b1
|
Add ABiMS - NXF_SINGULARITY_CACHEDIR
|
2020-10-23 00:11:58 +02:00 |
|
lecorguille
|
f21d16b24f
|
Add ABiMS - fix lint
|
2020-10-22 17:47:25 +02:00 |
|
lecorguille
|
a63ca751ee
|
Add ABiMS
|
2020-10-22 16:57:41 +02:00 |
|
James A. Fellows Yates
|
7088ed196f
|
Update mpcdf.md
|
2020-10-22 11:08:29 +02:00 |
|