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734 commits 4 branches 0 tags 1.9 MiB
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158 commits

Author SHA1 Message Date
phue
9b3fda36f6 update singularity version 
singularity/3.1.0 is not available anymore
 2019-10-10 21:22:19 +02:00
phue
5e257e7e9a add cbe profile 2019-09-22 16:45:09 +02:00
MaxUlysse
f69524d59a feat: update docs 2019-08-07 11:56:10 +02:00
MaxUlysse
332ba0dadb fix: update and rearrange munin configuration file and docs 2019-08-07 11:10:48 +02:00
Martin Proks
c583aa0233 Added kraken config (#15) 
* Added kraken template
* docs: updated some info
* fix: updated igenomes_base path
 2019-08-05 11:19:05 +02:00
Alexander Peltzer
82ffedf895
Drop aquila 2019-07-30 18:53:36 +02:00
Alexander Peltzer
4e48d4cc62
Fix remaining points by drpatelh 2019-07-30 18:53:00 +02:00
Alexander Peltzer
35c715ca3b
Merge remote-tracking branch 'upstream/master' 2019-07-30 16:53:19 +02:00
Remi Planel
1c0d596582 Merge remote-tracking branch 'upstream/master' 2019-07-30 16:15:20 +02:00
Remi Planel
be28a34839 Updat Pasteur doc 2019-07-30 16:12:30 +02:00
Remi Planel
64e78a3dc1 Update the doc 2019-07-30 15:17:25 +02:00
Remi Planel
6f264ac2ca Add pasteur profile doc 2019-07-30 15:15:30 +02:00
marchoeppner
b74f020f14
Update docs/ccga_dx.md 
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
 2019-07-29 12:45:30 +02:00
marchoeppner
71bc98afae Adding config file for CCGA dx cluster 2019-07-29 12:06:29 +02:00
Olga Botvinnik
474e98daaf
Merge branch 'master' into olgabot/czb-update 2019-07-09 16:02:25 -07:00
marchoeppner
fe0153befd Updating CCGA documentation 2019-07-05 08:30:02 +02:00
marchoeppner
d66bf4e478 Updating CCGA documentation 2019-07-05 08:28:18 +02:00
Olga Botvinnik
b82d68c009 Add docs 2019-06-24 17:55:01 -07:00
Alexander Peltzer
ebe838ac7e
Merge pull request #45 from czbiohub/olgabot/czbiohub 
[WIP] Add CZ Biohub
 2019-06-06 13:35:34 +02:00
Olga Botvinnik
ad7e26ea69 Write out docs for czbiohub" 
git push
 2019-06-05 14:42:24 -07:00
Alexander Peltzer
515e9484de
Merge pull request #44 from drpatelh/dev 
Add proper nf-core logo
 2019-06-01 12:36:57 +02:00
drpatelh
ac804859f4 Add nf-core logo 2019-05-31 00:47:06 +01:00
Alexander Peltzer
0acdcc3813 Add Aquila Config Singapore 2019-05-04 23:20:15 +02:00
Tobias Schraink
d91b06d884 added missing line in prince and bigpurple docs 2019-04-18 14:25:27 -04:00
Tobias Schraink
4ba831705d added nyu prince and bigpurple md files, added singularity cacheDir to prince and bigpurple configs 2019-04-18 14:13:02 -04:00
KochTobi
aaa7be049a
Update cfc config 
* Change singularity version documentation
 2019-03-16 14:11:59 +01:00
James A. Fellows Yates
e503a3a064
Added new cluster and singularity cache 2019-03-14 21:21:31 +01:00
phue
13df59bfaf remove singularity support 
reasons:

* the kernel running on the compute nodes does not support overlayfs und thus containers downloaded from
  public registries won't run because they lack the /lustre mountpoint

* building containers manually using the Singularity file would work, however nf-core pipelines will stop
  providing these files in future releases
 2019-03-12 17:57:31 +00:00
phue
6fc65b54a2 add mendel.md 2019-02-27 22:26:31 +00:00
drpatelh
24fb466bc0 Changed description for Singularity image download 2019-01-11 14:52:15 +00:00
Harshil Patel
789d211b18
Update munin.md 2019-01-11 14:32:35 +00:00
Martin Proks
7acd9cf7df
Updating suggested changes 2019-01-11 15:28:10 +01:00
Martin Proks
89dbb6c061
Setting Singularity as default method 2019-01-11 14:37:12 +01:00
Martin Proks
548c8bca3f
Updated munin doc and configuration 2019-01-10 15:46:16 +01:00
James A. Fellows Yates
f62613588f
Removed newline typo 2019-01-07 20:35:40 +01:00
James A. Fellows Yates
2344b16693
Merge pull request #1 from jfy133/SHH_documentation 
Create shh documentation
 2019-01-07 20:28:47 +01:00
James A. Fellows Yates
7f3acac4f4
Create shh documentation 2019-01-07 20:28:31 +01:00
James A. Fellows Yates
0325e556f2
Fixed the mysterious 'insert here' Institution 2019-01-07 20:25:39 +01:00
Phil Ewels
66a08891c7 Documentation tweaks 2019-01-07 14:25:06 +01:00
Phil Ewels
325dfe3968
Update docs/binac.md 
Co-Authored-By: apeltzer <apeltzer@users.noreply.github.com>
 2019-01-07 12:11:31 +01:00
Phil Ewels
1758fbc11c
Update docs/cfc.md 
Co-Authored-By: apeltzer <apeltzer@users.noreply.github.com>
 2019-01-07 12:11:19 +01:00
Phil Ewels
6d14461adc
Update docs/template.md 
Co-Authored-By: apeltzer <apeltzer@users.noreply.github.com>
 2019-01-07 12:11:02 +01:00
Phil Ewels
94e546fd4b
Update docs/uzh.md 
Co-Authored-By: apeltzer <apeltzer@users.noreply.github.com>
 2019-01-07 12:10:41 +01:00
Alexander Peltzer
02e97811c6 Get rid of template / iGenomes stuff 2019-01-07 11:21:17 +01:00
Alexander Peltzer
6a12e763ea Get rid of examples 2019-01-07 11:16:58 +01:00
Alexander Peltzer
ce4b0373fa Add in UZH 2019-01-06 15:35:26 +01:00
Alexander Peltzer
0d7ae3717f Add in docs for CFC cluster 2019-01-06 15:34:52 +01:00
Alexander Peltzer
d5f41d837c Remove non-required heading 2019-01-04 17:14:08 +01:00
Alexander Peltzer
c2fa8d5441 Add BINAC documentation 2019-01-04 17:13:03 +01:00
Alexander Peltzer
bcd85940fa Add Template for Documentation of Cluster Resources 2019-01-04 17:12:59 +01:00
drpatelh
c58aaef190 Minor modifications 2018-11-29 17:49:19 +00:00
drpatelh
08dce7453a Added bash statement to code-block 2018-11-29 15:12:35 +00:00
drpatelh
891d83b249 Fixed a type 2018-11-29 12:15:02 +00:00
drpatelh
fd226aac33 Properly changed link to crick.config 2018-11-28 17:04:33 +00:00
drpatelh
a2c848c8e4 Changed link to crick.config 2018-11-28 17:03:35 +00:00
drpatelh
c49ef07a1e Changed link to reference genomes docs 2018-11-28 17:02:02 +00:00
drpatelh
64dd812fad Bit of restructuring 2018-11-28 16:58:09 +00:00
drpatelh
0c598846e0 Modified README and added crick config 2018-11-27 09:17:55 +00:00