James A. Fellows Yates
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530da4d8c0
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Merge pull request #167 from jfy133/master
Bump number of eager @shh retries to account for deep sequencing data
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2020-06-30 11:33:29 +02:00 |
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James A. Fellows Yates
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c52428cd72
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Bump number of eager @shh retries to account for deep sequencing data
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2020-06-30 08:19:25 +02:00 |
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Alexander Peltzer
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f877644059
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Merge branch 'master' into master
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2020-05-29 11:43:47 +02:00 |
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Alexander Peltzer
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6011419454
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Merge pull request #154 from jfy133/master
Update SHH nf-core/eager group-specific profiles
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2020-05-27 17:52:09 +02:00 |
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James A. Fellows Yates
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d070ed70d1
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Update BWA settings based on feedback
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2020-05-26 11:11:42 +02:00 |
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James A. Fellows Yates
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ff915ee504
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Update shh.config
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2020-05-12 12:47:59 +02:00 |
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James A. Fellows Yates
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38e9e54932
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Merge pull request #151 from jfy133/master
Add additional custom nf-core/eager params for SHH profile
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2020-05-07 09:25:02 +02:00 |
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James A. Fellows Yates
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cf6e697f0b
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Further update aln based on modifications of EAGER defaults
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2020-05-07 09:16:08 +02:00 |
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James A. Fellows Yates
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d42d7f4146
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Sets the bwa aln parameter to 0.01 which is more commonly used at SHH
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2020-05-04 21:02:16 +02:00 |
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MaxUlysse
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e6f4d58fa6
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update rnafusion munin specific config
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2020-04-28 17:06:04 +02:00 |
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Harshil Patel
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2300d5a962
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Update genomes.config
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2020-04-09 18:22:41 +01:00 |
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MaxUlysse
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50a44d037b
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better docs and organisation of giles
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2020-04-09 17:02:36 +02:00 |
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Maxime Garcia
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34dc18faf6
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Update uppmax.config
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2020-04-09 11:35:37 +02:00 |
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Adrian Larkeryd
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405801638a
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icr_davros sarek config description
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2020-04-08 11:56:17 +01:00 |
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Maxime Garcia
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d1ff87a416
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Merge pull request #145 from bioatlas/master
Adding UPPMAX specific config for ampliseq
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2020-03-31 15:46:21 +02:00 |
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Daniel Lundin
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c8de9be701
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Adding UPPMAX specific config for ampliseq
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2020-03-31 15:17:24 +02:00 |
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MaxUlysse
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db2dd4458b
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Merge remote-tracking branch 'upstream/master' into UPPMAX
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2020-03-30 16:41:08 +02:00 |
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MaxUlysse
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8b570507cd
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update s
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2020-03-30 16:40:11 +02:00 |
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Maxime Garcia
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123132d89a
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Update munin.config
fix typo
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2020-03-12 17:23:55 +01:00 |
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Maxime Garcia
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b6d52fdb89
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Update conf/pipeline/sarek/munin.config
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2020-03-11 15:48:29 +01:00 |
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Maxime Garcia
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0f34d757a9
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Update munin.config
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2020-03-11 15:48:17 +01:00 |
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MaxUlysse
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d24a296a01
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add munin/rnafusion specific config
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2020-03-11 14:02:01 +01:00 |
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MaxUlysse
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dd1ddf864b
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update sarek munin config
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2020-03-11 14:01:28 +01:00 |
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Adrian Larkeryd
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a882b6cbaa
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adding icr_davros config files generic and sarek
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2020-03-04 15:00:33 +00:00 |
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Maxime Garcia
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9a8bb12020
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Update conf/pipeline/sarek/uppmax.config
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2020-02-27 17:22:03 +01:00 |
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Maxime Garcia
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8acbdacf03
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Update conf/pipeline/sarek/uppmax.config
Co-Authored-By: Johannes Alneberg <johannes.alneberg@scilifelab.se>
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2020-02-27 17:21:03 +01:00 |
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Maxime Garcia
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09ff8f5790
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Update conf/pipeline/sarek/uppmax.config
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2020-02-27 17:02:31 +01:00 |
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Maxime Garcia
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17d6a7e922
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Update conf/pipeline/sarek/uppmax.config
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2020-02-27 17:02:13 +01:00 |
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Maxime Garcia
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ab8998e12b
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Update uppmax.config
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2020-02-27 16:52:51 +01:00 |
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MaxUlysse
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9f74e88041
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update file
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2020-02-24 14:36:45 +01:00 |
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MaxUlysse
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aa905cd645
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add UPPMAX specific sarek config
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2020-02-20 17:14:18 +01:00 |
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James A. Fellows Yates
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638758423a
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Restricts MALT re-tries and hardcodes resources so cannot go above SDAG max
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2019-12-21 20:55:54 +01:00 |
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Maxime Garcia
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d36172d4cf
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Merge pull request #110 from MaxUlysse/MUNIN
fix issue with withLabel selector
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2019-12-12 13:03:23 +01:00 |
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MaxUlysse
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2bf66514c5
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fix issue with withLabel selector
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2019-12-12 11:50:10 +01:00 |
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Alexander Peltzer
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a6d08ed646
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Adjust custom pipeline config for ampliseq on BINAC
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2019-12-11 16:09:44 +01:00 |
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James A. Fellows Yates
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8747be8120
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More tweaks, nextflow appears to add a little extra?
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2019-12-06 19:27:16 +01:00 |
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James A. Fellows Yates
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5c6760b2f0
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Tweak back again
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2019-12-06 19:25:07 +01:00 |
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James A. Fellows Yates
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46f6d20a77
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Put parameters back to correct levels
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2019-12-06 19:13:29 +01:00 |
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James A. Fellows Yates
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18931763fa
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Add space?
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2019-12-06 19:11:08 +01:00 |
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James A. Fellows Yates
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f59443daf0
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Update shh.config
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2019-12-06 19:09:20 +01:00 |
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James A. Fellows Yates
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1ab1370872
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Try to make resources satisfiable
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2019-12-06 19:06:05 +01:00 |
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James A. Fellows Yates
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6e596d1730
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Fix stupid wrong bracket typo -.-
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2019-12-06 18:37:39 +01:00 |
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jfy133
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e8b4675692
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Cleanup and tweaking
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2019-12-06 13:17:31 +01:00 |
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James A. Fellows Yates
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0033b74e4e
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Update shh.config
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2019-12-05 18:08:39 +01:00 |
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James A. Fellows Yates
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dc0f1dfb40
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Update shh.config
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2019-12-05 17:58:49 +01:00 |
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James A. Fellows Yates
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b1a8b45aa0
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Maybe typo?
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2019-12-05 17:52:53 +01:00 |
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jfy133
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731372dac2
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Added SHH specific EAGER configuration
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2019-12-05 17:01:10 +01:00 |
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MaxUlysse
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25f3bd68f8
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container = null
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2019-11-26 15:21:53 +01:00 |
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MaxUlysse
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ebdfc2a768
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fix container/module collision
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2019-11-26 11:59:00 +01:00 |
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Maxime Garcia
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880551d246
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Apply suggestions from code review
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2019-11-26 11:58:13 +01:00 |
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Maxime Garcia
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f6c2e4c65f
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Update docs/pipeline/sarek/munin.md
Update conf/pipeline/sarek/munin.config
testing out module and containers collision
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2019-11-26 11:57:51 +01:00 |
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Maxime Garcia
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9d23f7a266
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Update conf/pipeline/sarek/munin.config
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2019-11-26 11:56:02 +01:00 |
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MaxUlysse
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45cec1ac2f
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Add specific sarek config base, munin specific sarek config and docs
rename file
improve configs
remove unnecessary params
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2019-11-26 11:52:53 +01:00 |
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MaxUlysse
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028008c1d0
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improve syntax
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2019-11-26 11:48:29 +01:00 |
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MaxUlysse
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e98f74e47b
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actually belong to nf-core/configs/munin
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2019-11-26 11:48:29 +01:00 |
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MaxUlysse
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edde1ee64d
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fix container/module collision
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2019-11-26 11:48:29 +01:00 |
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Maxime Garcia
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9a57e487d7
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Apply suggestions from code review
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2019-11-26 11:48:29 +01:00 |
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Maxime Garcia
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b029ccaa59
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Update docs/pipeline/sarek/munin.md
Update conf/pipeline/sarek/munin.config
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2019-11-26 11:48:11 +01:00 |
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Maxime Garcia
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73047968cf
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Update conf/pipeline/sarek/munin.config
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2019-11-26 11:25:29 +01:00 |
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MaxUlysse
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cd1d0b5f8f
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Add specific sarek config base, munin specific sarek config and docs
rename file
improve configs
remove unnecessary params
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2019-11-26 11:25:29 +01:00 |
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