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Author SHA1 Message Date
Praveen Raj S
50c4610345
Adjusted time and maxforks for Mutect2 2022-03-15 16:29:19 +01:00
Alexander Peltzer
3e4fae71a4
Merge branch 'master' into fix-show-profiles 2022-03-15 14:52:29 +01:00
James A. Fellows Yates
47bb41a1d8
Merge pull request #348 from jfy133/eva-update 
Update eager @ eva to exclude slow nodes for mapping
 2022-03-15 07:54:52 +01:00
James A. Fellows Yates
1b5037ce5e
Update eva.config 2022-03-15 07:49:06 +01:00
James A. Fellows Yates
1565b2ce63
Update eva.config 2022-03-15 07:42:23 +01:00
James A. Fellows Yates
f725b6c431
Apply suggestions from code review 2022-03-15 07:36:34 +01:00
Nathan S. Watson-Haigh
a0f5ac7445
Added references subdir to igenomes_base 2022-03-15 11:41:51 +10:30
James A. Fellows Yates
4670f8bf0c
Update eva.config 2022-03-14 14:56:01 +01:00
James A. Fellows Yates
a2e2e94333
Merge pull request #344 from njspix/vai 
Add VAI configuration
 2022-03-14 14:36:00 +01:00
James A. Fellows Yates
a154738c5e
Merge pull request #347 from nf-core/pr-template-update 
Update PULL_REQUEST_TEMPLATE.md
 2022-03-14 10:11:21 +01:00
James A. Fellows Yates
b7909c33c8
Update PULL_REQUEST_TEMPLATE.md 2022-03-14 08:27:10 +01:00
James A. Fellows Yates
30d9f82c65
Merge pull request #138 from Emiller88/pr-templates 
chore: add new config PR template
 2022-03-14 08:06:09 +01:00
Nathan Watson-Haigh
cc55026751 Add singularity to PATH 2022-03-13 07:39:31 +10:30
Nathan Watson-Haigh
2f0b022571 Fixed typos 2022-03-13 00:08:42 +10:30
Nathan Watson-Haigh
dba3fb4c1d Added SAHMRI HPC profile docs 2022-03-13 00:05:34 +10:30
Nathan Watson-Haigh
b58a9952be Added SAHMRI HPC profile 2022-03-12 21:24:05 +10:30
Nathan Watson-Haigh
b638694bd0 Added SAHMRI HPC profile 2022-03-12 21:17:33 +10:30
Matiss
6c79c75eec
Merge pull request #290 from maxozo/master 
added leicester profile
 2022-03-11 09:21:09 +00:00
Nathan Spix
d067f61329
remove extra spaces 2022-03-07 15:22:18 -05:00
Spix
17c77ad516 update singularity command 2022-03-07 15:13:26 -05:00
Spix
c97c48ae5b update singularity command 2022-03-07 15:11:45 -05:00
Spix
429c7b4fa8 initial commit 2022-03-07 15:01:46 -05:00
Alexander Peltzer
d0d86bfb2a
Merge pull request #339 from jfy133/rnaseq_mpcdf 
Add RNASEQ specific config for MPCDF
 2022-03-07 13:59:08 +01:00
James A. Fellows Yates
975fca6721
Apply suggestions from code review 2022-03-07 13:51:00 +01:00
Alexander Peltzer
5cde6f3886
Merge pull request #342 from zajacn/master 
Update on md file
 2022-03-07 13:44:00 +01:00
Natalia Zajac
c2e0c9e6d4 Update on md file 2022-03-07 12:59:56 +01:00
Phil Ewels
098296bce8
Merge pull request #341 from zajacn/master 
Addition of FGCZ config
 2022-03-07 12:48:23 +01:00
Natalia Zajac
97058995ef Update on singularity cache 2022-03-07 12:37:01 +01:00
Natalia Zajac
e07a0e548e Config Addition 2022-03-04 12:16:01 +01:00
James Fellows Yates
70318c3b2a Tweak eager settigs 2022-03-03 14:29:30 +01:00
James A. Fellows Yates
18890fc3cf
Merge pull request #3 from ilight1542/mpcdf_eager_config_update 
modified mpcdf configs (general + eager)
 2022-03-03 14:25:58 +01:00
James A. Fellows Yates
546393ed18
Apply suggestions from code review 2022-03-03 14:22:35 +01:00
ilight1542
5a0543e4ac
Merge branch 'rnaseq_mpcdf' into mpcdf_eager_config_update 2022-03-03 14:17:18 +01:00
ilight1542
25c644abb7 modified mpcdf configs (general + eager) 2022-03-03 13:55:02 +01:00
James Fellows Yates
7112e74b73 Tweak settings based on latest batch specs 2022-03-03 13:43:40 +01:00
James Fellows Yates
008ade7ab3 Merge branch 'rnaseq_mpcdf' of github.com:jfy133/nf-core-configs into rnaseq_mpcdf 2022-03-03 12:26:18 +01:00
James Fellows Yates
e649bfbb2e Linting 2022-03-03 12:26:14 +01:00
James A. Fellows Yates
17312604cf
Update mpcdf.config 2022-03-03 12:25:06 +01:00
James Fellows Yates
94f8cbcb84 Add rnaseq pipeline specific config for MPCDF 2022-03-03 12:20:02 +01:00
James A. Fellows Yates
341ea3664e
Merge pull request #336 from jfy133/master 
Fix markdown linting from recently merged configs
 2022-03-02 08:57:20 +01:00
James A. Fellows Yates
121452afad
Linting 2022-03-02 08:51:20 +01:00
James A. Fellows Yates
15a0571eae
Fix markdown 2022-03-02 08:50:42 +01:00
James A. Fellows Yates
a412510ce8
Merge pull request #335 from jfy133/master 
Remove reference to now-decomissioned dracro @ MPCDF & clean up eager @EVA
 2022-03-02 08:47:47 +01:00
James A. Fellows Yates
adcfe22f98
Remove draco entry to MPCDF profiles due to decomissioning 2022-03-02 08:38:55 +01:00
James A. Fellows Yates
8174fe6d52
Merge pull request #2 from nf-core/jfy133-patch 
sync
 2022-03-02 08:34:31 +01:00
James A. Fellows Yates
5547e45ab5
Merge branch 'master' into jfy133-patch 2022-03-02 08:28:22 +01:00
James A. Fellows Yates
ea052a7b67
Merge pull request #334 from jfy133/eva-update 
eva: generalise custom SGE mem flag
 2022-03-01 09:23:04 +01:00
James A. Fellows Yates
a6c12d8edc
Merge pull request #322 from U-BDS/master 
Add UAB Cheaha profile
 2022-03-01 08:29:54 +01:00
Austyn Trull
00deea7442 Adding cheaha to Github Actions testing yaml. 2022-02-28 10:00:13 -06:00
James A. Fellows Yates
06aaebbad1
Merge pull request #303 from PCQuilis/patch-2 
added marvin.md link
 2022-02-28 15:03:20 +01:00