James A. Fellows Yates
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38e9e54932
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Merge pull request #151 from jfy133/master
Add additional custom nf-core/eager params for SHH profile
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2020-05-07 09:25:02 +02:00 |
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James A. Fellows Yates
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0a312cd2c9
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Update shh.md
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2020-05-07 09:17:56 +02:00 |
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James A. Fellows Yates
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cf6e697f0b
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Further update aln based on modifications of EAGER defaults
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2020-05-07 09:16:08 +02:00 |
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James A. Fellows Yates
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4d7e9ccf2f
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Apply suggestions from review
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2020-05-06 08:35:23 +02:00 |
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James A. Fellows Yates
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4804052b23
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Update SHH nf-core/eager pipeline docs
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2020-05-04 21:04:17 +02:00 |
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James A. Fellows Yates
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d42d7f4146
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Sets the bwa aln parameter to 0.01 which is more commonly used at SHH
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2020-05-04 21:02:16 +02:00 |
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FriederikeHanssen
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d6813d9c39
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Add scratch = true to avoid writing of intermediate file to /tmp
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2020-05-04 17:09:43 +02:00 |
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Maxime Garcia
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fe77f02551
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Merge pull request #150 from MaxUlysse/Munin
update rnafusion munin specific config
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2020-04-28 17:46:17 +02:00 |
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MaxUlysse
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e6f4d58fa6
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update rnafusion munin specific config
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2020-04-28 17:06:04 +02:00 |
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Adrian
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ad12bd4ad1
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testing automounts
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2020-04-28 16:03:06 +01:00 |
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Adrian
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1e68a10ef0
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adding documentation for icr_davros
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2020-04-28 16:02:26 +01:00 |
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Harshil Patel
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2300d5a962
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Update genomes.config
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2020-04-09 18:22:41 +01:00 |
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Harshil Patel
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a17cac1ceb
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Merge pull request #149 from MaxUlysse/viralreconupdate
Viralreconupdate
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2020-04-09 18:22:06 +01:00 |
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Harshil Patel
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53125368be
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Merge branch 'master' into viralreconupdate
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2020-04-09 18:21:05 +01:00 |
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Harshil Patel
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6834f020cb
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Update viralrecon.config
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2020-04-09 17:49:15 +01:00 |
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MaxUlysse
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5678494e45
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fix typo
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2020-04-09 17:13:19 +02:00 |
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MaxUlysse
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50a44d037b
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better docs and organisation of giles
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2020-04-09 17:02:36 +02:00 |
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Harshil Patel
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6adc7342e9
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Merge pull request #148 from MaxUlysse/viralrecon
add viralrecon specific config
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2020-04-09 13:34:23 +01:00 |
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Harshil Patel
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4fd9b73cec
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Update pipeline/viralrecon.config
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2020-04-09 13:31:39 +01:00 |
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Harshil Patel
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290d0a2180
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Update pipeline/viralrecon.config
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2020-04-09 13:31:20 +01:00 |
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MaxUlysse
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19316ce852
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add viralrecon specific config
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2020-04-09 13:40:35 +02:00 |
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Maxime Garcia
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de5b7717ff
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Merge pull request #147 from nf-core/MaxUlysse-patch-1
Update uppmax.config
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2020-04-09 12:08:41 +02:00 |
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Maxime Garcia
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34dc18faf6
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Update uppmax.config
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2020-04-09 11:35:37 +02:00 |
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Adrian Larkeryd
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405801638a
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icr_davros sarek config description
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2020-04-08 11:56:17 +01:00 |
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Adrian Larkeryd
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78be4b358e
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icr_davros igenomes base
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2020-04-08 11:55:16 +01:00 |
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Adrian Larkeryd
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82965d25c8
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hostname warning for davros
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2020-04-08 11:54:34 +01:00 |
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Maxime Garcia
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d1ff87a416
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Merge pull request #145 from bioatlas/master
Adding UPPMAX specific config for ampliseq
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2020-03-31 15:46:21 +02:00 |
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Daniel Lundin
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e77cd38092
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Adding ampliseq/UPPMAX doc to README.md
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2020-03-31 15:42:25 +02:00 |
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Daniel Lundin
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e0f9374272
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Update pipeline/ampliseq.config
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
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2020-03-31 15:33:19 +02:00 |
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Daniel Lundin
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5a557ed7d5
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Update pipeline/ampliseq.config
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
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2020-03-31 15:33:12 +02:00 |
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Daniel Lundin
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79ef94de47
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Update pipeline/ampliseq.config
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
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2020-03-31 15:33:04 +02:00 |
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Daniel Lundin
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c8de9be701
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Adding UPPMAX specific config for ampliseq
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2020-03-31 15:17:24 +02:00 |
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Phil Ewels
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554ab6673c
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Merge pull request #144 from MaxUlysse/UPPMAX
[UPPMAX] add s.* pattern for bianca cluster
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2020-03-30 17:01:38 +02:00 |
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MaxUlysse
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db2dd4458b
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Merge remote-tracking branch 'upstream/master' into UPPMAX
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2020-03-30 16:41:08 +02:00 |
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MaxUlysse
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8b570507cd
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update s
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2020-03-30 16:40:11 +02:00 |
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Gisela Gabernet
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15574ab849
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Merge pull request #143 from ggabernet/master
add cfc_dev profile
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2020-03-23 17:46:34 +01:00 |
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ggabernet
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fa01e6c5c1
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add cfc_dev to test yml
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2020-03-23 17:27:36 +01:00 |
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ggabernet
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d02e2b8a36
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add cfc_dev and warning for binac and cfc
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2020-03-23 17:22:02 +01:00 |
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ggabernet
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c81f693f73
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add cfc_dev config
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2020-03-23 17:16:34 +01:00 |
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Olga Botvinnik
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f414b4c52d
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Merge pull request #142 from nf-core/olgabot-patch-1
Add AaegL5.0 genome to czbiohub_aws
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2020-03-17 16:46:12 -07:00 |
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Olga Botvinnik
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52369ba6ad
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Add AaegL5.0 config
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2020-03-17 16:45:20 -07:00 |
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Maxime Garcia
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8b1835484e
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Merge pull request #141 from nf-core/MaxUlysse-patch-1
Update munin.config
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2020-03-12 17:31:09 +01:00 |
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Maxime Garcia
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123132d89a
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Update munin.config
fix typo
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2020-03-12 17:23:55 +01:00 |
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Phil Ewels
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5a3bdcca5b
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Merge pull request #139 from Emiller88/utd
fix(ganymede): use singularity/2.4.5
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2020-03-11 16:54:01 +00:00 |
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Maxime Garcia
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a3934c84e0
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Merge pull request #140 from MaxUlysse/Munin
Update Munin specific configs
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2020-03-11 15:55:11 +01:00 |
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Maxime Garcia
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b6d52fdb89
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Update conf/pipeline/sarek/munin.config
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2020-03-11 15:48:29 +01:00 |
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Maxime Garcia
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0f34d757a9
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Update munin.config
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2020-03-11 15:48:17 +01:00 |
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MaxUlysse
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4a7f98a83b
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update TOC
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2020-03-11 15:41:58 +01:00 |
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MaxUlysse
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6be1716797
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revert * to - changes
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2020-03-11 15:39:36 +01:00 |
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MaxUlysse
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d4bea56f52
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add munin/rnafusion specific docs + markdownlint
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2020-03-11 14:23:23 +01:00 |
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