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Author SHA1 Message Date
Maxime U. Garcia
6e2a24bdd6
Merge pull request #426 from Aratz/master 
Update UPPMAX documentation
 2022-10-10 16:39:58 +02:00
Adrien Coulier
278ae391a0
Apply suggestions from code review 
replace `nf-tools` by `nf-core`

Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
 2022-10-10 16:21:47 +02:00
Adrien Coulier
ec8d67285a Run prettier 2022-10-10 16:03:39 +02:00
Adrien Coulier
fb17e0c7f4 Explain how to install nf-core through modules 
fixes #345
 2022-10-10 15:35:58 +02:00
Edmund Miller
5c65e69941
Merge pull request #424 from nf-core/demux-awstower 
feat(demultiplex): Add optimized transfers for bases2fastq
 2022-10-05 23:01:40 +00:00
Edmund Miller
33708acdc5
docs(demultiplex): Add aws_tower docs 2022-10-05 17:21:23 -05:00
Edmund Miller
0cabf67b61
feat(demultiplex): Add optimized transfers for bases2fastq 2022-10-05 17:21:23 -05:00
Phil Ewels
62d4e0d06b
Merge pull request #425 from sheffield-bioinformatics-core/sbc_sharc 
Updates to sbc_sharc configs
 2022-10-05 21:21:14 +02:00
Lewis Quayle
755862fc61
Merge branch 'nf-core:master' into sbc_sharc 2022-10-05 19:55:43 +01:00
Alexander Peltzer
540add8238
Merge pull request #422 from giusmar/master 
Add TIGEM config file
 2022-10-05 16:40:24 +02:00
Alexander Peltzer
e2146b5905
Update docs/tigem.md 2022-10-05 09:59:07 +02:00
Giuseppe Martone
64fec62a6d
Merge branch 'master' into master 2022-10-04 22:59:17 +02:00
Giuseppe Martone
e37bccc9d8
Update tigem.config 2022-10-04 22:58:50 +02:00
Giuseppe Martone
baf857654c
Update tigem.md 2022-10-04 22:28:38 +02:00
Alexander Peltzer
a9781042c7
Merge pull request #392 from nf-core/custom-mag-eva 
Fix python related seg faults mag@eva
 2022-10-04 21:58:49 +02:00
Alexander Peltzer
0d8471a082
Merge pull request #421 from Puumanamana/master 
University of Hawaii at Manoa's HPCC config
 2022-10-04 21:56:40 +02:00
Alexander Peltzer
8b68ffce89
Merge branch 'master' into custom-mag-eva 2022-10-04 21:55:37 +02:00
nf-core-bot
cade84aacd [automated] Fix linting with Prettier 2022-10-04 19:50:51 +00:00
Phil Ewels
7556391c97
Merge pull request #423 from marchoeppner/ccga_beegfs_update 
Updating CCGA med to use the new Beegfs file system
 2022-10-04 14:31:19 +02:00
Phil Ewels
e78d941105
Merge branch 'master' into ccga_beegfs_update 2022-10-04 14:18:51 +02:00
Marc Hoeppner
e5b798e21f Updating CCGA med to use the new Beegfs file system 2022-10-04 14:07:44 +02:00
Giuseppe Martone
5758687a09
Update main.yml 2022-10-04 11:07:36 +02:00
Giuseppe Martone
a4244eb346
Update README.md 2022-10-04 11:06:26 +02:00
Giuseppe Martone
bde7502ed2
Update nfcore_custom.config 2022-10-04 10:54:13 +02:00
Giuseppe Martone
2479c1e7e8
Update tigem.md 2022-10-04 10:53:27 +02:00
Giuseppe Martone
da0482a904
Create tigem.md 2022-10-04 10:52:50 +02:00
Giuseppe Martone
ce39096f32
Create tigem.config 2022-10-04 10:44:19 +02:00
lquayle88
584052cfff Revised base and all pipeline configs to provide memory on per core basis 2022-10-04 09:12:29 +01:00
lquayle88
3f2ffa314d Revised base and sarek configs to provide memory on per core basis 2022-10-04 00:25:16 +01:00
Cedric
2825f33ded
conda env setup improvement 2022-10-02 19:15:59 -10:00
Cedric
d429a59a0d
add automounts for singularity 2022-10-02 18:44:22 -10:00
Cedric Arisdakessian
e89cb7bd5e fix indentation 2022-10-03 03:49:04 +00:00
Cedric Arisdakessian
3b8b170203 added mana in gh actions 2022-10-03 03:47:03 +00:00
Cedric Arisdakessian
9cc679c811 fix mana name 2022-10-03 03:43:51 +00:00
Cedric Arisdakessian
7b1e360a35 added mana 2022-10-03 03:42:07 +00:00
Cedric Arisdakessian
9b710a07f5 add mana config 2022-10-03 03:41:23 +00:00
Cedric Arisdakessian
32cdea4b59 documentation for mana config 2022-10-03 03:38:48 +00:00
Cedric Arisdakessian
c479780d8f create mana config 2022-10-03 03:38:20 +00:00
lquayle88
e7ac3ecd19 Modified resource requests in sbc_sharc.config for sarek 2022-10-02 00:24:39 +01:00
lquayle88
9b451b53b7 Increased cpus and memory for GATK4_MARKDUPLICATES in sbc_sharc.config for sarek 2022-10-01 23:31:51 +01:00
lquayle88
10c1490265 Increased memory and time for GATK4_MARKDUPLICATES in sbc_sharc.config for sarek 2022-10-01 23:15:13 +01:00
lquayle88
dbb3b3b44b Reinstated maxRetries and increased memory for GATK4_MARKDUPLICATES in sbc_sharc.config for sarek 2022-10-01 07:45:28 +01:00
lquayle88
8103718389 Reduced maxRetries upon error in sbc_sharc.config for sarek 2022-09-30 16:54:48 +01:00
Lewis Quayle
1eea9b464a
Merge branch 'nf-core:master' into sbc_sharc 2022-09-28 10:49:05 +01:00
Bruno Grande
57f63add02
Merge pull request #417 from Sage-Bionetworks-Workflows/bgrande/sage-improve-downloads 
Improve reliability of file transfers with retries and reduced concurrency
 2022-09-26 10:24:14 -07:00
Bruno Grande
735df9ef76
Merge branch 'master' into bgrande/sage-improve-downloads 2022-09-26 10:22:27 -07:00
Patrick Hüther
51ae760889
Merge pull request #413 from phue/biohpc_charliecloud_patch 
biohpc_gen: update required modules
 2022-09-25 23:28:04 +02:00
Lewis Quayle
e89114df8d
Merge branch 'nf-core:master' into sbc_sharc 2022-09-23 17:02:29 +01:00
lquayle88
c42a5a9a94 Updated resources requested by pipelines 2022-09-23 17:01:58 +01:00
James A. Fellows Yates
2b1141e9c9
Merge pull request #420 from SPPearce/crukmi 
Update crukmi.config
 2022-09-23 15:14:43 +02:00