871 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
Johannes Alneberg	59cd8d69ed	Merge pull request #180 from MaxUlysse/rackham ... Rackham	2020-09-29 10:31:04 +02:00
MaxUlysse	2ccbdd3367	update params to latest version	2020-09-28 13:59:42 +02:00
MaxUlysse	8c0cc4b9ec	code polishing	2020-09-25 09:57:50 +02:00
MaxUlysse	81f910cc95	add specific BamQC config	2020-09-25 09:49:43 +02:00
MaxUlysse	fbe7bd133a	update uppmax specific sarek config	2020-09-25 08:33:53 +02:00
James A. Fellows Yates	11f1fb71db	Update mpcdf.config	2020-09-16 10:21:58 +02:00
James A. Fellows Yates	bbbdd3cb0f	Update mpcdf.config	2020-09-16 10:21:42 +02:00
James A. Fellows Yates	5b3492d240	Update mpcdf.config	2020-09-16 10:21:26 +02:00
James A. Fellows Yates	3115963b3e	Update mpcdf.config	2020-09-15 19:53:27 +02:00
James A. Fellows Yates	c6f7573d01	Update mpcdf.config	2020-09-15 17:48:54 +02:00
James A. Fellows Yates	bf87ec24e7	Update mpcdf.config	2020-09-15 17:45:38 +02:00
Edmund Miller	87c757dc47	Merge pull request #179 from Emiller88/utd ... feat: add Kim queue	2020-09-14 10:28:43 -05:00
Edmund Miller	2c06019d89	fix(utd): Add check for less than 12 cpu	2020-09-13 20:46:14 -05:00
Edmund Miller	dc2735207e	feat(utd): add Kim queue	2020-09-13 20:46:10 -05:00
James A. Fellows Yates	3b7902d11b	Mad multi-core increase CPUs on retry	2020-09-06 08:23:35 +02:00
James A. Fellows Yates	4335e5deb7	Update mpcdf.config	2020-09-04 20:17:09 +02:00
James A. Fellows Yates	af8d25ed09	Update main.yml	2020-09-04 20:14:35 +02:00
James A. Fellows Yates	4f991d2c0c	Update eager.config	2020-09-04 19:59:27 +02:00
James A. Fellows Yates	b4e275c3b9	Add MPCDF for EAGER	2020-09-04 19:57:25 +02:00
James A. Fellows Yates	5c7ab234b6	Create mpcdf.config	2020-09-04 19:55:40 +02:00
James A. Fellows Yates	65fce5c2a5	Update nfcore_custom.config	2020-09-04 19:52:46 +02:00
James A. Fellows Yates	9df85be081	Update mpcdf.md	2020-09-03 20:27:15 +02:00
James A. Fellows Yates	09cd5cad65	Update mpcdf.md	2020-09-03 20:25:37 +02:00
James A. Fellows Yates	0a685c1cc2	Update mpcdf.config	2020-09-03 20:24:11 +02:00
James A. Fellows Yates	a1c5dc5fde	Update README.md	2020-09-03 20:22:27 +02:00
James A. Fellows Yates	0501ae4c1a	Started docs for mpcdf	2020-09-03 20:21:49 +02:00
James A. Fellows Yates	42a1a15970	Create mpcdf.config	2020-09-03 20:11:56 +02:00
James A. Fellows Yates	6261add35e	Merge pull request #12 from nf-core/master ... Merge pull request #176 from jfy133/master	2020-09-03 15:12:14 +02:00
James A. Fellows Yates	3d744d9aea	Merge pull request #176 from jfy133/master ... Add new group profile for eager@SHH	2020-08-11 09:24:43 +02:00
James A. Fellows Yates	09cfabd37f	Add new microbiome_screening profile to docs	2020-08-11 09:20:31 +02:00
James A. Fellows Yates	c3fa87e4bc	Add microbiome screening profile for NT sized MALT runs for nf-core/eager@SHH	2020-08-11 09:18:36 +02:00
James A. Fellows Yates	de9f5ab560	Merge pull request #11 from nf-core/master ... Get latest changes	2020-08-11 09:10:13 +02:00
Harshil Patel	69a660da3b	Merge pull request #175 from drpatelh/master ... Remove loading of specific Singularity version	2020-08-03 11:46:21 +01:00
drpatelh	165af5122f	Update docs	2020-08-03 11:39:23 +01:00
drpatelh	b804076959	Remove hard Singularity version	2020-08-03 11:38:10 +01:00
Alexander Peltzer	11f6107922	Merge pull request #174 from maxibor/master ... Add temporary CDAG setting for SHH config	2020-07-23 16:09:28 +02:00
maxibor	69a0bd572b	add temporary CDAG setting for SHH config	2020-07-23 15:38:28 +02:00
James A. Fellows Yates	d38ffc289b	Merge pull request #173 from jfy133/shh-eager-hops-update ... Remove now deprecated EAGER flag for HOPS profile	2020-07-20 11:34:49 +02:00
James A. Fellows Yates	57ac9257a9	Remove now deprecated EAGER flag for HOPS profile	2020-07-20 11:29:12 +02:00
Alexander Peltzer	a498e98342	Merge pull request #170 from jfy133/master ... Make walltimes more sophisticated and add a HOPS profile for nf-core/eager @ SHH	2020-07-15 15:11:24 +02:00
James A. Fellows Yates	84e03b8264	Re-bump default walltimes after debugging/testing	2020-07-11 18:31:04 +02:00
James A. Fellows Yates	8f6409d144	Remove min support percent value to avoid confusion	2020-07-08 15:26:19 +02:00
James A. Fellows Yates	1af9ce293c	Update hops profile based on requests from pathogen group	2020-07-08 15:22:33 +02:00
James A. Fellows Yates	c57a404f18	Add desc for hops	2020-07-08 10:45:43 +02:00
jfy133	15dad7e2e7	Add caveats for EAGER @ SHH profiles	2020-07-08 09:47:03 +02:00
jfy133	926c14f7ee	Cleverer process time submission	2020-07-08 09:36:56 +02:00
jfy133	563c27e1bb	Try again to get better time resource submission	2020-07-08 09:36:28 +02:00
James A. Fellows Yates	c6905b609e	Update shh.config	2020-07-08 09:25:21 +02:00
James A. Fellows Yates	b360ce26bc	Update shh.config	2020-07-08 09:24:06 +02:00
James A. Fellows Yates	31edb4b5d7	Update shh.config	2020-07-08 09:20:00 +02:00