154 commits

Author	SHA1	Message	Date
jfy133	e1c8c86d70	Updated core config	2019-11-26 20:26:59 +01:00
Alexander Peltzer	23f9fd2d73	Merge branch 'master' into master	2019-11-26 14:20:36 +01:00
Alexander Peltzer	9caf9821c9	Use strip	2019-11-26 14:04:58 +01:00
Alexander Peltzer	cb876594a3	Proper user tests now :-)	2019-11-26 13:57:32 +01:00
Noirot Céline	ed4436c1a6	Merge branch 'master' into master	2019-11-25 16:24:12 +01:00
noirot	42d968fd2a	add genotoul in nfcore_custom	2019-11-25 16:23:25 +01:00
MaxUlysse	08a6b74825	add new profile to be shared: awsbatch	2019-11-19 14:16:06 +01:00
Alexander Peltzer	3b6c9d0360	Fix denbi docs	2019-11-11 12:28:45 +01:00
phue	5a9dbe5d7c	MENDEL is no more ... the cluster is no longer operational, was replaced by CBE	2019-10-28 14:11:34 +01:00
Anthony Bretaudeau	1f2786c78f	add genouest cluster	2019-10-16 18:15:04 +02:00
phue	5e257e7e9a	add cbe profile	2019-09-22 16:45:09 +02:00
Martin Proks	da2a9047b0	fix: added kraken to the list (#64)	2019-08-05 14:59:36 +02:00
drpatelh	e0c684ee8f	Aarrrgh pulling configs from master	2019-07-31 23:39:42 +01:00
drpatelh	a692ded933	Remove workDir in czbiohub	2019-07-31 23:30:51 +01:00
drpatelh	7ee70fb742	Add in uppmax-devel	2019-07-31 22:52:20 +01:00
drpatelh	0326b56038	Add czbiohub back in	2019-07-31 22:48:22 +01:00
drpatelh	f3e61fdd66	Add prince back in	2019-07-31 22:40:43 +01:00
drpatelh	0f6802a7c8	Add hebbe back in	2019-07-31 22:37:11 +01:00
drpatelh	a496bfaeef	Remove uppmax_devel	2019-07-31 22:33:49 +01:00
drpatelh	70919d0dd3	Remove more configs	2019-07-31 22:28:03 +01:00
drpatelh	8be2897961	Remove problematic configs	2019-07-31 22:27:37 +01:00
drpatelh	daf1b9dcd2	Fix type in uppmax-devel	2019-07-31 22:09:30 +01:00
drpatelh	840a97ed68	Clean up and alphabetasize	2019-07-31 21:52:16 +01:00
Remi Planel	1c0d596582	Merge remote-tracking branch 'upstream/master'	2019-07-30 16:15:20 +02:00
marchoeppner	b31db18dfb	Adding config file for CCGA dx cluster	2019-07-29 12:08:07 +02:00
Remi Planel	1cb132a457	Define a profile for the Pasteur config	2019-07-24 11:32:25 +02:00
Olga Botvinnik	474e98daaf	Merge branch 'master' into olgabot/czb-update	2019-07-09 16:02:25 -07:00
Olga Botvinnik	069963ff8a	Make czbiohub_aws_highpriority only set the AWS Batch queue and nothing else	2019-07-03 16:01:47 -07:00
Olga Botvinnik	6a2d2003f0	Add high priority AWS batch queue to CZBiohub AWS	2019-07-01 09:25:46 -07:00
Olga Botvinnik	cfcb533b95	Add czbiohub_aws to list of configs"	2019-06-25 19:02:49 -07:00
Olga Botvinnik	268e411d10	Add czbiohub_aws to list	2019-06-05 14:42:15 -07:00
Tobias Schraink	51c2a54399	added nyu prince and bigpurple configs	2019-04-17 16:59:38 -04:00
Harshil Patel	26c101a5ab	Alphabetical order	2019-03-13 16:53:30 +00:00
Harshil Patel	1843b2218c	Update nfcore_custom.config	2019-03-13 16:52:57 +00:00
Harshil Patel	857b0565c2	Update nfcore_custom.config	2019-03-13 16:51:45 +00:00
Phil Ewels	d0ca05a221	;	2019-03-13 17:33:23 +01:00
Phil Ewels	1191863e1c	Removed params.config_profile_name, added params.hostnames	2019-03-13 17:19:34 +01:00
Sven Fillinger	1dc523d726	Removes test config	2019-03-08 10:37:27 +01:00
Sven F	4e1cb46dc5	Update nfcore_custom.config	2019-03-06 20:22:45 +01:00
Sven F	23c05308de	Merge branch 'master' into dev	2019-03-06 19:54:32 +01:00
drpatelh	53d56310bb	Added conf folder to paths	2019-03-06 18:14:45 +00:00
Sven Fillinger	638f986f34	Adds profile integration tests	2019-03-06 17:42:14 +01:00
Phil Ewels	6daf76f47d	Hotfix for breaking pipelines that don't already support params.custom_config_base	2019-03-06 17:03:13 +01:00
Sven F	ad47005fb6	Update nfcore_custom.config ... Co-Authored-By: apeltzer <apeltzer@users.noreply.github.com>	2019-03-06 13:13:52 +01:00
Alexander Peltzer	20deaf3b46	Provide fix for online issues	2019-03-06 12:59:54 +01:00
Alexander Peltzer	8ebcfa26a9	Update nfcore_custom.config ... Fix mini typo	2019-03-06 08:21:34 +01:00
Phil Ewels	9fb5715c4c	Added support for new params.custom_config_base option	2019-03-05 16:12:39 +01:00
Martin Proks	548c8bca3f	Updated munin doc and configuration	2019-01-10 15:46:16 +01:00
Alexander Peltzer	d633cc87d0	Add SHH to config available	2019-01-03 16:03:45 +01:00
phue	5c609859c5	add config for MENDEL cluster	2018-12-04 16:58:33 +01:00
Harshil Patel	19c66f002b	Update nfcore_custom.config	2018-11-26 23:40:11 +00:00
Harshil Patel	d1f10bba3e	Update nfcore_custom.config	2018-11-26 22:49:03 +00:00
Phil Ewels	e38e9327f4	Some tidying	2018-11-26 17:32:06 +01:00
drpatelh	1bf45362e5	Added custom profiles	2018-11-23 16:33:22 +00:00