360 commits

Author	SHA1	Message	Date
rbpisupati	7c1c4c7fa4	changes to cbe module loading	2022-02-02 22:42:13 +01:00
rbpisupati	9b5ac5c89d	added anaconda module for cbe	2021-01-15 12:55:46 +01:00
James A. Fellows Yates	a4c55b3ea9	Fix time limit 0-9 typo	2021-01-06 10:44:12 +01:00
Combiz Khozoie	17cf4e3b35	fixed indents	2020-12-18 15:34:56 +00:00
Combiz Khozoie	3824403b4e	removed workDir from Imperial configs	2020-12-18 10:31:36 +00:00
Combiz Khozoie	a61992d144	Added institutional configs for Imperial and Imperial MEDBIO. Added institutional pipeline configs for scflow for Imperial and Imperial MEDBIO	2020-12-18 10:21:26 +00:00
marcel-keller	c9ceaff3b3	change of directory for conda environments ... change of directory due to recent changes in our infrastructure	2020-12-09 15:11:21 +02:00
emnilsson	8cc2fc5ecb	Merge pull request #193 from emnilsson/master ... Modified ampliseq-specific uppmax-config	2020-12-02 13:40:43 +01:00
Alexander Peltzer	99985c658f	Merge pull request #194 from marcel-keller/ebc ... Update ebc.config	2020-11-26 14:12:33 +01:00
marcel-keller	5590a9743a	Update ebc.config ... queueSize to 64	2020-11-26 15:05:25 +02:00
Emelie Nilsso	febf38dd8e	Removed an old process so that only relevant processes are included	2020-11-26 13:38:47 +01:00
Emelie Nilsso	d61ed01d2d	Updated process names according to ampliseq main.nf	2020-11-25 17:50:30 +01:00
Emelie Nilsso	37e7cfae2c	Removed unnecessary code that was used to troubleshoot	2020-11-24 07:14:23 +01:00
Emelie Nilsso	cd59bba83e	Merge branch 'master' of https://github.com/nf-core/configs	2020-11-24 07:10:05 +01:00
Emelie Nilsso	c47088cda2	Merge remote-tracking branch 'origin'	2020-11-23 21:34:08 +01:00
Emelie Nilsso	2ea06ffab8	Modified uppmax and ampliseq specific config to fit with the divided preparation of the database	2020-11-23 21:20:36 +01:00
Thiseas C. Lamnidis	71d1ff2226	Add params block to sdag queue ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2020-11-18 13:04:46 +01:00
Thiseas C. Lamnidis	da781907f2	Move sdag queue specification block in sdag profile	2020-11-17 19:45:06 +01:00
Maxime Borry	c95fd9d52f	Merge pull request #186 from jfy133/shh-singularity-runoptions ... Remove custom singularity runOptions from SHH config	2020-11-10 15:39:40 +01:00
James A. Fellows Yates	9d4d682867	Update shh.config	2020-11-10 15:14:03 +01:00
lecorguille	90d1f9072b	Add ABiMS - autoMounts = false	2020-10-22 18:18:55 +02:00
lecorguille	a63ca751ee	Add ABiMS	2020-10-22 16:57:41 +02:00
James A. Fellows Yates	804f53c58c	Merge pull request #178 from jfy133/master ... Add Max Planck Computing and Data Facility Cobra/Raven Clusters	2020-10-22 13:34:11 +02:00
James A. Fellows Yates	3995057d7f	Update mpcdf.config	2020-10-22 10:42:46 +02:00
James A. Fellows Yates	05deeca2d6	Update mpcdf.config	2020-10-15 14:22:35 +02:00
James A. Fellows Yates	e26c22b2f1	Update shh.config	2020-09-29 14:03:35 +02:00
MaxUlysse	2ccbdd3367	update params to latest version	2020-09-28 13:59:42 +02:00
MaxUlysse	8c0cc4b9ec	code polishing	2020-09-25 09:57:50 +02:00
MaxUlysse	81f910cc95	add specific BamQC config	2020-09-25 09:49:43 +02:00
MaxUlysse	fbe7bd133a	update uppmax specific sarek config	2020-09-25 08:33:53 +02:00
James A. Fellows Yates	11f1fb71db	Update mpcdf.config	2020-09-16 10:21:58 +02:00
James A. Fellows Yates	bbbdd3cb0f	Update mpcdf.config	2020-09-16 10:21:42 +02:00
James A. Fellows Yates	5b3492d240	Update mpcdf.config	2020-09-16 10:21:26 +02:00
James A. Fellows Yates	3115963b3e	Update mpcdf.config	2020-09-15 19:53:27 +02:00
James A. Fellows Yates	c6f7573d01	Update mpcdf.config	2020-09-15 17:48:54 +02:00
James A. Fellows Yates	bf87ec24e7	Update mpcdf.config	2020-09-15 17:45:38 +02:00
Edmund Miller	2c06019d89	fix(utd): Add check for less than 12 cpu	2020-09-13 20:46:14 -05:00
Edmund Miller	dc2735207e	feat(utd): add Kim queue	2020-09-13 20:46:10 -05:00
James A. Fellows Yates	3b7902d11b	Mad multi-core increase CPUs on retry	2020-09-06 08:23:35 +02:00
James A. Fellows Yates	4335e5deb7	Update mpcdf.config	2020-09-04 20:17:09 +02:00
James A. Fellows Yates	b4e275c3b9	Add MPCDF for EAGER	2020-09-04 19:57:25 +02:00
James A. Fellows Yates	5c7ab234b6	Create mpcdf.config	2020-09-04 19:55:40 +02:00
James A. Fellows Yates	0a685c1cc2	Update mpcdf.config	2020-09-03 20:24:11 +02:00
James A. Fellows Yates	42a1a15970	Create mpcdf.config	2020-09-03 20:11:56 +02:00
James A. Fellows Yates	c3fa87e4bc	Add microbiome screening profile for NT sized MALT runs for nf-core/eager@SHH	2020-08-11 09:18:36 +02:00
drpatelh	b804076959	Remove hard Singularity version	2020-08-03 11:38:10 +01:00
maxibor	69a0bd572b	add temporary CDAG setting for SHH config	2020-07-23 15:38:28 +02:00
James A. Fellows Yates	d38ffc289b	Merge pull request #173 from jfy133/shh-eager-hops-update ... Remove now deprecated EAGER flag for HOPS profile	2020-07-20 11:34:49 +02:00
James A. Fellows Yates	57ac9257a9	Remove now deprecated EAGER flag for HOPS profile	2020-07-20 11:29:12 +02:00
Alexander Peltzer	a498e98342	Merge pull request #170 from jfy133/master ... Make walltimes more sophisticated and add a HOPS profile for nf-core/eager @ SHH	2020-07-15 15:11:24 +02:00