rbpisupati
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7c1c4c7fa4
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changes to cbe module loading
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2022-02-02 22:42:13 +01:00 |
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rbpisupati
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9b5ac5c89d
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added anaconda module for cbe
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2021-01-15 12:55:46 +01:00 |
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James A. Fellows Yates
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a4c55b3ea9
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Fix time limit 0-9 typo
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2021-01-06 10:44:12 +01:00 |
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Combiz Khozoie
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17cf4e3b35
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fixed indents
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2020-12-18 15:34:56 +00:00 |
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Combiz Khozoie
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3824403b4e
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removed workDir from Imperial configs
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2020-12-18 10:31:36 +00:00 |
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Combiz Khozoie
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a61992d144
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Added institutional configs for Imperial and Imperial MEDBIO. Added institutional pipeline configs for scflow for Imperial and Imperial MEDBIO
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2020-12-18 10:21:26 +00:00 |
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marcel-keller
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c9ceaff3b3
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change of directory for conda environments
change of directory due to recent changes in our infrastructure
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2020-12-09 15:11:21 +02:00 |
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emnilsson
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8cc2fc5ecb
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Merge pull request #193 from emnilsson/master
Modified ampliseq-specific uppmax-config
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2020-12-02 13:40:43 +01:00 |
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Alexander Peltzer
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99985c658f
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Merge pull request #194 from marcel-keller/ebc
Update ebc.config
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2020-11-26 14:12:33 +01:00 |
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marcel-keller
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5590a9743a
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Update ebc.config
queueSize to 64
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2020-11-26 15:05:25 +02:00 |
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Emelie Nilsso
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febf38dd8e
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Removed an old process so that only relevant processes are included
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2020-11-26 13:38:47 +01:00 |
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Emelie Nilsso
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d61ed01d2d
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Updated process names according to ampliseq main.nf
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2020-11-25 17:50:30 +01:00 |
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Emelie Nilsso
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37e7cfae2c
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Removed unnecessary code that was used to troubleshoot
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2020-11-24 07:14:23 +01:00 |
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Emelie Nilsso
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cd59bba83e
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Merge branch 'master' of https://github.com/nf-core/configs
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2020-11-24 07:10:05 +01:00 |
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Emelie Nilsso
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c47088cda2
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Merge remote-tracking branch 'origin'
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2020-11-23 21:34:08 +01:00 |
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Emelie Nilsso
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2ea06ffab8
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Modified uppmax and ampliseq specific config to fit with the divided preparation of the database
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2020-11-23 21:20:36 +01:00 |
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Thiseas C. Lamnidis
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71d1ff2226
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Add params block to sdag queue
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2020-11-18 13:04:46 +01:00 |
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Thiseas C. Lamnidis
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da781907f2
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Move sdag queue specification block in sdag profile
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2020-11-17 19:45:06 +01:00 |
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Maxime Borry
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c95fd9d52f
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Merge pull request #186 from jfy133/shh-singularity-runoptions
Remove custom singularity runOptions from SHH config
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2020-11-10 15:39:40 +01:00 |
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James A. Fellows Yates
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9d4d682867
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Update shh.config
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2020-11-10 15:14:03 +01:00 |
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lecorguille
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90d1f9072b
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Add ABiMS - autoMounts = false
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2020-10-22 18:18:55 +02:00 |
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lecorguille
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a63ca751ee
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Add ABiMS
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2020-10-22 16:57:41 +02:00 |
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James A. Fellows Yates
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804f53c58c
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Merge pull request #178 from jfy133/master
Add Max Planck Computing and Data Facility Cobra/Raven Clusters
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2020-10-22 13:34:11 +02:00 |
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James A. Fellows Yates
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3995057d7f
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Update mpcdf.config
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2020-10-22 10:42:46 +02:00 |
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James A. Fellows Yates
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05deeca2d6
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Update mpcdf.config
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2020-10-15 14:22:35 +02:00 |
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James A. Fellows Yates
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e26c22b2f1
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Update shh.config
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2020-09-29 14:03:35 +02:00 |
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MaxUlysse
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2ccbdd3367
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update params to latest version
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2020-09-28 13:59:42 +02:00 |
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MaxUlysse
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8c0cc4b9ec
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code polishing
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2020-09-25 09:57:50 +02:00 |
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MaxUlysse
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81f910cc95
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add specific BamQC config
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2020-09-25 09:49:43 +02:00 |
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MaxUlysse
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fbe7bd133a
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update uppmax specific sarek config
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2020-09-25 08:33:53 +02:00 |
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James A. Fellows Yates
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11f1fb71db
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Update mpcdf.config
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2020-09-16 10:21:58 +02:00 |
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James A. Fellows Yates
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bbbdd3cb0f
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Update mpcdf.config
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2020-09-16 10:21:42 +02:00 |
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James A. Fellows Yates
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5b3492d240
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Update mpcdf.config
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2020-09-16 10:21:26 +02:00 |
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James A. Fellows Yates
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3115963b3e
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Update mpcdf.config
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2020-09-15 19:53:27 +02:00 |
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James A. Fellows Yates
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c6f7573d01
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Update mpcdf.config
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2020-09-15 17:48:54 +02:00 |
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James A. Fellows Yates
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bf87ec24e7
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Update mpcdf.config
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2020-09-15 17:45:38 +02:00 |
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Edmund Miller
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2c06019d89
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fix(utd): Add check for less than 12 cpu
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2020-09-13 20:46:14 -05:00 |
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Edmund Miller
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dc2735207e
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feat(utd): add Kim queue
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2020-09-13 20:46:10 -05:00 |
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James A. Fellows Yates
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3b7902d11b
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Mad multi-core increase CPUs on retry
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2020-09-06 08:23:35 +02:00 |
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James A. Fellows Yates
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4335e5deb7
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Update mpcdf.config
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2020-09-04 20:17:09 +02:00 |
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James A. Fellows Yates
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b4e275c3b9
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Add MPCDF for EAGER
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2020-09-04 19:57:25 +02:00 |
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James A. Fellows Yates
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5c7ab234b6
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Create mpcdf.config
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2020-09-04 19:55:40 +02:00 |
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James A. Fellows Yates
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0a685c1cc2
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Update mpcdf.config
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2020-09-03 20:24:11 +02:00 |
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James A. Fellows Yates
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42a1a15970
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Create mpcdf.config
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2020-09-03 20:11:56 +02:00 |
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James A. Fellows Yates
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c3fa87e4bc
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Add microbiome screening profile for NT sized MALT runs for nf-core/eager@SHH
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2020-08-11 09:18:36 +02:00 |
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drpatelh
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b804076959
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Remove hard Singularity version
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2020-08-03 11:38:10 +01:00 |
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maxibor
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69a0bd572b
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add temporary CDAG setting for SHH config
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2020-07-23 15:38:28 +02:00 |
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James A. Fellows Yates
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d38ffc289b
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Merge pull request #173 from jfy133/shh-eager-hops-update
Remove now deprecated EAGER flag for HOPS profile
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2020-07-20 11:34:49 +02:00 |
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James A. Fellows Yates
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57ac9257a9
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Remove now deprecated EAGER flag for HOPS profile
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2020-07-20 11:29:12 +02:00 |
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Alexander Peltzer
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a498e98342
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Merge pull request #170 from jfy133/master
Make walltimes more sophisticated and add a HOPS profile for nf-core/eager @ SHH
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2020-07-15 15:11:24 +02:00 |
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