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Author SHA1 Message Date
Combiz Khozoie
4bb52358f5 updated Github Actions YML 2020-12-18 10:27:40 +00:00
Combiz Khozoie
a61992d144 Added institutional configs for Imperial and Imperial MEDBIO. Added institutional pipeline configs for scflow for Imperial and Imperial MEDBIO 2020-12-18 10:21:26 +00:00
Alexander Peltzer
65e2ff56d8
Merge pull request #195 from marcel-keller/patch-1 
change of directory for conda environments
 2020-12-09 14:35:00 +01:00
marcel-keller
c9ceaff3b3
change of directory for conda environments 
change of directory due to recent changes in our infrastructure
 2020-12-09 15:11:21 +02:00
Maxime Garcia
2fb205264e
Merge pull request #192 from arontommi/dev 
Documentation for Bianca
 2020-12-09 11:09:23 +01:00
emnilsson
8cc2fc5ecb
Merge pull request #193 from emnilsson/master 
Modified ampliseq-specific uppmax-config
 2020-12-02 13:40:43 +01:00
Alexander Peltzer
99985c658f
Merge pull request #194 from marcel-keller/ebc 
Update ebc.config
 2020-11-26 14:12:33 +01:00
marcel-keller
5590a9743a
Update ebc.config 
queueSize to 64
 2020-11-26 15:05:25 +02:00
arontommi
ac108379cd trailing spaces 2020-11-26 13:58:16 +01:00
arontommi
c2c7265518 fix linting errors 2020-11-26 13:47:47 +01:00
Emelie Nilsso
7095101652 Merge branch 'master' of https://github.com/nf-core/configs 2020-11-26 13:43:42 +01:00
Emelie Nilsso
febf38dd8e Removed an old process so that only relevant processes are included 2020-11-26 13:38:47 +01:00
arontommi
6480aef1db typo 2020-11-26 11:41:33 +01:00
arontommi
f84fbb8f89 typo 2020-11-26 11:39:51 +01:00
arontommi
e6bb7a4852 capital names 2020-11-26 11:37:59 +01:00
arontommi
5726ef3456 typo 2020-11-26 11:26:08 +01:00
arontommi
06469901fe typo 2020-11-26 11:24:29 +01:00
arontommi
ebf754bf43 documentation for bianca 2020-11-26 09:53:51 +01:00
Phil Ewels
d134286487
Merge pull request #190 from ewels/uppmax-docs 
Better UPPMAX docs
 2020-11-26 01:43:47 +01:00
Phil Ewels
e96455e180
Update docs/uppmax.md 2020-11-26 01:43:09 +01:00
Phil Ewels
d9a8009662 Better UPPMAX docs 2020-11-25 22:45:16 +01:00
Emelie Nilsso
d61ed01d2d Updated process names according to ampliseq main.nf 2020-11-25 17:50:30 +01:00
Emelie Nilsso
37e7cfae2c Removed unnecessary code that was used to troubleshoot 2020-11-24 07:14:23 +01:00
Emelie Nilsso
cd59bba83e Merge branch 'master' of https://github.com/nf-core/configs 2020-11-24 07:10:05 +01:00
Emelie Nilsso
c47088cda2 Merge remote-tracking branch 'origin' 2020-11-23 21:34:08 +01:00
Emelie Nilsso
2ea06ffab8 Modified uppmax and ampliseq specific config to fit with the divided preparation of the database 2020-11-23 21:20:36 +01:00
James A. Fellows Yates
f3c7b36e3d
Merge pull request #189 from nf-core/TCLamnidis-patch-1 
Move sdag queue specification block in sdag profile
 2020-11-18 13:16:54 +01:00
Thiseas C. Lamnidis
71d1ff2226
Add params block to sdag queue 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2020-11-18 13:04:46 +01:00
Thiseas C. Lamnidis
da781907f2
Move sdag queue specification block in sdag profile 2020-11-17 19:45:06 +01:00
Harshil Patel
be9cb33ac1
Merge pull request #188 from andrewfrank/patch-1 
Fix parameters in google.md
 2020-11-12 17:12:41 +00:00
Andrew Frank
d70fc2605a
Fix parameters in google.md 
Change parameters from hyphens to underscores to accurately reflect google.config
 2020-11-12 11:52:58 -05:00
James A. Fellows Yates
4dfacc1894
Merge pull request #13 from nf-core/master 
Sync latest changes
 2020-11-10 16:34:16 +01:00
Maxime Borry
c95fd9d52f
Merge pull request #186 from jfy133/shh-singularity-runoptions 
Remove custom singularity runOptions from SHH config
 2020-11-10 15:39:40 +01:00
James A. Fellows Yates
9d4d682867
Update shh.config 2020-11-10 15:14:03 +01:00
Gisela Gabernet Garriga
885f0ce5f6 awsbatch config update 2020-11-09 22:41:38 +01:00
Maxime Garcia
3cc3445549
Merge pull request #183 from abims-sbr/abims 
Add ABiMS
 2020-10-23 09:57:20 +02:00
lecorguille
e3d733d87e Add ABiMS - fix lint 2020-10-23 09:29:54 +02:00
lecorguille
4d03f72c78 Add ABiMS - last bits of doc 2020-10-23 09:27:12 +02:00
lecorguille
6ee6b7bf56 Add ABiMS - remove a useless link 2020-10-23 00:12:02 +02:00
lecorguille
c974972585 Add ABiMS - side files 2020-10-23 00:12:02 +02:00
lecorguille
23ba1c58b1 Add ABiMS - NXF_SINGULARITY_CACHEDIR 2020-10-23 00:11:58 +02:00
lecorguille
90d1f9072b Add ABiMS - autoMounts = false 2020-10-22 18:18:55 +02:00
lecorguille
f21d16b24f Add ABiMS - fix lint 2020-10-22 17:47:25 +02:00
lecorguille
a63ca751ee Add ABiMS 2020-10-22 16:57:41 +02:00
James A. Fellows Yates
804f53c58c
Merge pull request #178 from jfy133/master 
Add Max Planck Computing and Data Facility Cobra/Raven Clusters
 2020-10-22 13:34:11 +02:00
James A. Fellows Yates
7088ed196f
Update mpcdf.md 2020-10-22 11:08:29 +02:00
James A. Fellows Yates
3995057d7f
Update mpcdf.config 2020-10-22 10:42:46 +02:00
James A. Fellows Yates
0d6e269322
Update mpcdf.md 2020-10-15 14:24:08 +02:00
James A. Fellows Yates
05deeca2d6
Update mpcdf.config 2020-10-15 14:22:35 +02:00
James A. Fellows Yates
2c2d23ac26
Merge pull request #181 from nf-core/shh-patch 
Update SHH profile to reduce number of parallel jobs
 2020-09-29 14:24:12 +02:00