1089 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
James A. Fellows Yates	7ec12b6736	Update eva.config	2021-09-09 13:10:05 +02:00
James A. Fellows Yates	96e26a5411	Merge pull request #272 from jfy133/eva-eager-subprofiles ... Bump additional library merge memory for eager @ EVA	2021-09-08 15:25:07 +02:00
James A. Fellows Yates	4286a3a342	Bump additional library merge memor	2021-09-08 15:16:40 +02:00
Phil Ewels	dc8705e7cb	Merge pull request #270 from RoganGrant/master ... Set autoMounts to true	2021-09-06 23:09:07 +02:00
Rogan Grant	a7aca37bc8	Set autoMounts to true	2021-09-06 15:15:46 -05:00
Rogan Grant	b56b7b310b	Merge pull request #266 from RoganGrant/master ... Northwestern University Genomics Nodes (new add)	2021-09-06 13:26:49 -05:00
James A. Fellows Yates	4087ca13dd	Merge pull request #269 from jfy133/eva-eager-subprofiles ... More Java overhead fixes and update container cache location for eager @EVA	2021-09-06 15:00:22 +02:00
James A. Fellows Yates	39f54db097	Update container cache	2021-09-05 12:09:02 +02:00
James A. Fellows Yates	59a0901b68	Add library merge steps to have overhead	2021-09-05 12:07:53 +02:00
Rogan Grant	54298ca0f7	Merge branch 'nf-core:master' into master	2021-09-04 15:37:03 -05:00
rogangrant	a8d06ee356	Revert "Forgot a slash :(" ... This reverts commit d5601fea84.	2021-09-04 15:36:05 -05:00
Rogan Grant	d5601fea84	Forgot a slash :(	2021-09-04 15:19:32 -05:00
Rogan Grant	2c5e454d16	Updated iGenomes path for odd local structure on Quest	2021-09-04 15:13:41 -05:00
James A. Fellows Yates	94cbb031c6	Update eva.config	2021-08-30 13:29:44 +02:00
James A. Fellows Yates	5fbd938bc1	Export user env too	2021-08-27 10:08:20 +02:00
Phil Ewels	3d77ffdf55	Merge pull request #230 from nf-core/docs-custom_config_base	2021-08-23 19:34:30 +02:00
James A. Fellows Yates	bcb844f896	Merge pull request #268 from jfy133/master ... Delete SHH profiles due to decommissioning	2021-08-23 14:08:13 +02:00
James A. Fellows Yates	e8bb6d0dab	Merge pull request #267 from jfy133/eva-eager-subprofiles ... Add genotyping_ug to SGE fixes for EAGER @ EVA	2021-08-20 10:22:16 +02:00
James Fellows Yates	f41cb5986f	remove from testing	2021-08-20 10:18:04 +02:00
James Fellows Yates	59af7f0eee	Delete SHH profiles due to decommissioning	2021-08-20 10:15:39 +02:00
James A. Fellows Yates	6701354060	Add genotyping_ug to SGE fixes	2021-08-20 10:11:11 +02:00
James A. Fellows Yates	5c9896b687	Merge pull request #265 from jfy133/eva-eager-subprofiles ... eva/eager: Try new strategy for SGE and Java incompatibility	2021-08-04 10:43:14 +02:00
James Fellows Yates	b0e344846d	Changes after code review from @aidaanva	2021-08-04 10:37:49 +02:00
James Fellows Yates	76fc461670	Try new strategy for SGE/JAVA bs	2021-08-04 10:14:56 +02:00
Rogan Grant	f793ffaace	Updated iGenomes location	2021-08-03 15:10:54 -05:00
James A. Fellows Yates	0c3428f5d1	Merge pull request #263 from jfy133/master ... eager @ eva	2021-08-03 14:20:50 +02:00
James A. Fellows Yates	00491de038	Update eva.config	2021-08-03 13:54:14 +02:00
Rogan Grant	079258ebbb	Minor text edits	2021-07-29 11:38:40 -05:00
Rogan Grant	482478878d	Added instructions for module loading	2021-07-28 18:11:10 -05:00
Rogan Grant	24a2949fe2	Had executor options in wrong spot :(	2021-07-28 18:05:45 -05:00
Rogan Grant	6862fb8bfd	testing ternary operatory	2021-07-28 18:01:03 -05:00
Rogan Grant	bcc69fe83c	Enable use of himem nodes	2021-07-28 17:54:51 -05:00
Rogan Grant	ac11ca5568	Remove echo used for testing	2021-07-28 16:48:08 -05:00
Rogan Grant	3dd4f16d09	Added indicator for testing	2021-07-28 14:01:12 -05:00
Rogan Grant	09ed4d54b9	Just make command a single line for simplicity	2021-07-28 13:52:26 -05:00
Rogan Grant	09e0ea2674	typo	2021-07-28 13:46:40 -05:00
Rogan Grant	e1e0810d1b	Clean up module loading script	2021-07-28 13:44:48 -05:00
Rogan Grant	e2c566ed13	Testing "automounts"	2021-07-28 13:38:06 -05:00
Rogan Grant	f104250ff4	Removed comment	2021-07-28 13:34:49 -05:00
Rogan Grant	9df267a192	Merged duplicate params	2021-07-28 13:27:17 -05:00
Rogan Grant	ff6823ec1d	removed unnecessary space	2021-07-28 13:22:52 -05:00
Rogan Grant	9957e9eea1	Version 1 of custom config with queue-switching for long jobs and module loading	2021-07-28 13:11:02 -05:00
Rogan Grant	30ca555060	Added nu_genomics to list	2021-07-28 13:10:35 -05:00
Rogan Grant	e28a836702	Added nu_genomics to list	2021-07-28 13:10:18 -05:00
Rogan Grant	40170632aa	First draft of markdown file, with instructions for installing nextflow and getting access	2021-07-28 13:04:32 -05:00
Rogan Grant	2af0f4a774	Added link to NU Genomics markdown	2021-07-28 13:03:59 -05:00
BarryDigby	732c3cfe7d	Merge pull request #262 from BarryDigby/master ... NUIG config	2021-07-28 13:00:50 +01:00
Barry digby	2c6b9176e2	Merge branch 'master' of github.com:BarryDigby/configs	2021-07-28 12:19:45 +01:00
Barry digby	ef6b13e377	tabs rm	2021-07-28 12:19:11 +01:00
BarryDigby	871b82f6f4	Merge branch 'master' into master	2021-07-28 12:16:16 +01:00