Maxime Garcia
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1548690ca6
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Update docs/uppmax.md
Co-authored-by: Pontus Freyhult <pontus_github@soua.net>
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2021-04-21 12:27:27 +02:00 |
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Patrick Hüther
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fff04ce0ba
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Merge pull request #233 from phue/biohpc_gen
biohpc_gen: update software tree path
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2021-04-21 12:14:06 +02:00 |
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MaxUlysse
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bab9241243
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fix: markdownlint
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2021-04-21 11:51:14 +02:00 |
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MaxUlysse
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844246cc7d
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fix: clearer usage of module
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2021-04-21 11:28:58 +02:00 |
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MaxUlysse
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1a7ec56c33
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feat: more details
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2021-04-21 11:23:50 +02:00 |
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MaxUlysse
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c89877decc
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feat: use <PIPLEINE>
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2021-04-21 11:17:06 +02:00 |
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MaxUlysse
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658fa7ccda
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fix: markdownlint
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2021-04-21 11:08:16 +02:00 |
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Maxime Garcia
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79e3dd65a7
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Apply suggestions from code review
Co-authored-by: Pontus Freyhult <pontus_github@soua.net>
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2021-04-21 11:06:39 +02:00 |
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phue
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b225a0555a
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biohpc_gen: update software tree path
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2021-04-21 10:08:00 +02:00 |
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Maxime Garcia
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4eea06f0db
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Apply suggestions from code review
Co-authored-by: Pontus Freyhult <pontus_github@soua.net>
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2021-04-20 16:03:34 +02:00 |
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MaxUlysse
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1c1dd952fc
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fix: bullet list
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2021-04-20 15:58:51 +02:00 |
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Maxime Garcia
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e4d2ef0984
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Apply suggestions from code review
Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
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2021-04-20 15:53:54 +02:00 |
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MaxUlysse
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4930795cab
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feat: more complete docs
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2021-04-20 15:38:49 +02:00 |
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James A. Fellows Yates
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eacdf89e53
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Update eva.config
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2021-04-20 13:17:35 +02:00 |
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MaxUlysse
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10abca712b
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fix: first draft of bianca guide
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2021-04-16 17:01:58 +02:00 |
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Alexander Peltzer
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a525be112f
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Merge pull request #232 from jfy133/update-mpcdf
Update mpcdf to use singularity
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2021-04-16 09:28:46 +02:00 |
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James A. Fellows Yates
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12a4518803
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Markdown lint fix
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2021-04-15 22:29:15 +02:00 |
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James A. Fellows Yates
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b9a00f7926
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Update mpcdf.config
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2021-04-15 22:27:07 +02:00 |
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James A. Fellows Yates
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0fc90586e0
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Update mpcdf.md
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2021-04-15 22:26:37 +02:00 |
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Phil Ewels
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c7e4ea25f5
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Update README.md
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2021-04-14 23:30:17 +02:00 |
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Phil Ewels
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2f343868ad
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Apply suggestions from code review
Co-authored-by: Maxime Garcia <max.u.garcia@gmail.com>
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2021-04-13 22:52:31 +02:00 |
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Harshil Patel
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7ac66dcd72
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Update crick.config
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2021-04-13 17:07:02 +01:00 |
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Combiz Khozoie
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c571c05ab9
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Merge pull request #219 from slacalle/patch-2
Imperial College | Remove "/rdsgpfs"
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2021-04-13 15:28:00 +01:00 |
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MaxUlysse
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3918e0aa9d
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feat: remove kraken profile
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2021-04-13 15:14:14 +02:00 |
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Phil Ewels
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2afb4f0ad6
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Don't recommend setting --custom_config_base manually
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2021-04-13 14:37:54 +02:00 |
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Asaf Peer
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a0c8a9ec8f
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updated jax resources
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2021-04-12 16:00:34 -04:00 |
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Phil Ewels
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2f77d16b70
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Merge pull request #220 from ewels/master
UPPMAX: Avoid undefined parameter warnings
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2021-04-08 15:06:00 +02:00 |
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James A. Fellows Yates
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a2a47fdecc
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Merge pull request #224 from jfy133/eva
Add EVA profile for MPI-EVA (clean)
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2021-04-07 19:56:00 +02:00 |
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James A. Fellows Yates
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161c3a33d4
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Merge branch 'master' into eva
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2021-04-07 19:28:16 +02:00 |
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James A. Fellows Yates
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ce465cca57
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Apply suggestions from code review
Co-authored-by: Alexander Peltzer <apeltzer@users.noreply.github.com>
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2021-04-07 19:27:24 +02:00 |
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Alexander Peltzer
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91f50aad4e
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Merge pull request #221 from phue/biohpc_gen
Add BioHPC Genomics config
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2021-04-07 14:03:22 +02:00 |
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Patrick Hüther
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53b54ba845
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Remove whitespace
Co-authored-by: Alexander Peltzer <apeltzer@users.noreply.github.com>
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2021-04-07 13:18:06 +02:00 |
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ameynert
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efa051b3e4
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Merge pull request #222 from ameynert/master
Addition of ATAC-seq pipeline config, updated docs
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2021-04-07 09:48:29 +01:00 |
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ameynert
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0ab9edde72
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Delete conf/pipeline/atacseq directory
Pipeline-specific config not supported yet by ATAC-seq pipeline
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2021-04-07 09:24:30 +01:00 |
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James Fellows Yates
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8dac4ca552
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Merge branch 'eva' of github.com:jfy133/configs into eva
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2021-04-06 17:53:32 +02:00 |
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James Fellows Yates
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60c66d93ac
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Markdown linting
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2021-04-06 17:53:27 +02:00 |
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James A. Fellows Yates
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832edaa450
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Merge branch 'master' into eva
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2021-04-06 17:51:46 +02:00 |
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James A. Fellows Yates
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504c10d6ff
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Update README.md
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2021-04-06 17:50:25 +02:00 |
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James Fellows Yates
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be1d35840d
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Add EVA and EAGER@EVA
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2021-04-06 17:48:16 +02:00 |
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James Fellows Yates
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d69af0f287
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Merging
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2021-04-06 16:42:22 +02:00 |
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phue
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60ae267e43
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use SLURM_CLUSTERS env var
this seems to be more reliable for queue checking than using the clusterOptions directive. See https://github.com/nextflow-io/nextflow/issues/807
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2021-04-06 11:35:01 +02:00 |
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ameynert
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6e201a71f4
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ATAC-seq pipeline config
Java processes with overhead memory requirements
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2021-03-30 16:31:00 +01:00 |
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ameynert
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e5f2a63079
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Java overhead processes list updated
Added all processes calling GATK for Mutect2 variant calling
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2021-03-30 16:21:53 +01:00 |
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ameynert
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adfb5366b9
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Java overhead process list updated
Added HaplotypeCaller and GenotypeGVCFs to set of processes that need Java overhead
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2021-03-30 16:15:17 +01:00 |
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ameynert
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700776f759
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Change to shared Singularity cache
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2021-03-30 16:11:15 +01:00 |
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ameynert
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25716fe849
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Merge pull request #2 from nf-core/master
Merge commits from nf-core/configs master
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2021-03-30 16:09:32 +01:00 |
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phue
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7c5a0871a3
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add note about required nextflow version
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2021-03-29 19:36:49 +02:00 |
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phue
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8fc60e2e70
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add config for biohpc_gen
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2021-03-29 19:25:58 +02:00 |
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Gisela Gabernet
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71a97ba316
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Merge pull request #185 from ggabernet/master
awsbatch config update
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2021-03-28 20:59:40 +02:00 |
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Phil Ewels
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d34bc40841
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UPPMAX: add to schema_ignore_params
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2021-03-26 15:22:57 +01:00 |
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