James A. Fellows Yates
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bf658abc77
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Update eva.config
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2022-05-02 13:59:13 +02:00 |
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James A. Fellows Yates
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44238471cf
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Update eva.config
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2022-03-31 13:12:50 +02:00 |
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James Fellows Yates
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2277b541a3
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Re-add bash bin specification
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2022-03-31 11:06:53 +02:00 |
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James A. Fellows Yates
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8ad4ddac6a
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Merge branch 'master' into fix-eva
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2022-03-29 12:50:54 +02:00 |
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James Fellows Yates
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3d2a612b39
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Remove setting of bash in clusterOotions
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2022-03-29 12:48:37 +02:00 |
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b97pla
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9a6cdfc21e
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removed process-specific requirements for sarek, request miarka high-mem node
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2022-03-24 14:25:43 +01:00 |
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b97pla
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5466d927f1
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added requirements for uppmax cluster miarka
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2022-03-23 15:29:40 +01:00 |
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James A. Fellows Yates
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1b5037ce5e
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Update eva.config
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2022-03-15 07:49:06 +01:00 |
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James A. Fellows Yates
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1565b2ce63
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Update eva.config
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2022-03-15 07:42:23 +01:00 |
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James A. Fellows Yates
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f725b6c431
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Apply suggestions from code review
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2022-03-15 07:36:34 +01:00 |
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James A. Fellows Yates
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4670f8bf0c
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Update eva.config
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2022-03-14 14:56:01 +01:00 |
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James A. Fellows Yates
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975fca6721
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Apply suggestions from code review
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2022-03-07 13:51:00 +01:00 |
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James Fellows Yates
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70318c3b2a
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Tweak eager settigs
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2022-03-03 14:29:30 +01:00 |
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ilight1542
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5a0543e4ac
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Merge branch 'rnaseq_mpcdf' into mpcdf_eager_config_update
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2022-03-03 14:17:18 +01:00 |
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ilight1542
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25c644abb7
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modified mpcdf configs (general + eager)
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2022-03-03 13:55:02 +01:00 |
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James A. Fellows Yates
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17312604cf
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Update mpcdf.config
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2022-03-03 12:25:06 +01:00 |
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James Fellows Yates
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94f8cbcb84
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Add rnaseq pipeline specific config for MPCDF
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2022-03-03 12:20:02 +01:00 |
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James A. Fellows Yates
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5547e45ab5
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Merge branch 'master' into jfy133-patch
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2022-03-02 08:28:22 +01:00 |
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James A. Fellows Yates
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ea052a7b67
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Merge pull request #334 from jfy133/eva-update
eva: generalise custom SGE mem flag
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2022-03-01 09:23:04 +01:00 |
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James A. Fellows Yates
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46f046d477
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Update eva.config
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2022-02-28 14:00:37 +01:00 |
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Mei Wu
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dcba537d15
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picard md is single threaded
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2022-02-21 16:19:17 +01:00 |
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Combiz Khozoie
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2d434c6ee5
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Merge pull request #321 from nf-core/combiz-patch-1
Imperial config updates
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2022-02-11 14:49:30 +00:00 |
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Maxime U. Garcia
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4a936a685e
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Merge pull request #317 from nf-core/praveenraj2018-patch-1
Added genome parameter
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2022-02-11 15:33:18 +01:00 |
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Combiz Khozoie
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a77f718ae2
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Merge pull request #330 from nf-core/master
Pulling master to branch
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2022-02-11 14:18:01 +00:00 |
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Harshil Patel
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8fa6ab9b35
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Merge pull request #323 from stevin-wilson/patch-1
Added ARTIC v4.1 primer set information
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2022-02-10 19:17:47 +00:00 |
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James Fellows Yates
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88ddc9eee7
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fffff
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2022-02-10 11:34:57 +01:00 |
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James Fellows Yates
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d7d0f5cecc
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Change base time
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2022-02-10 11:32:49 +01:00 |
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James Fellows Yates
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dbd78f8075
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Re add .
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2022-02-10 11:26:18 +01:00 |
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James Fellows Yates
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dd94895f16
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remove quotes
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2022-02-10 11:22:45 +01:00 |
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James Fellows Yates
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39c2d9b25b
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Oops
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2022-02-10 11:19:16 +01:00 |
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James Fellows Yates
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c0ee3225ad
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Add times for 365d
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2022-02-10 11:02:52 +01:00 |
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Thiseas C. Lamnidis
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fa4075c2a0
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Removed all time limits
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2022-02-10 10:00:18 +01:00 |
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James A. Fellows Yates
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2b06293f64
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Read add empty BAM exit code for qualitmap 255
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2022-02-08 11:15:17 +01:00 |
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James A. Fellows Yates
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8c5a54ac9f
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Update conf/pipeline/eager/eva.config
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2022-02-06 19:37:53 +01:00 |
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James A. Fellows Yates
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aa525c6ebf
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Allow exit code 1 retry for all java processes
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2022-02-06 09:07:53 +01:00 |
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Stevin Wilson
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dbb71161c5
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Added ARTIC v4.1 primer set information
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2022-02-04 15:31:51 -05:00 |
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James A. Fellows Yates
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81fe720b00
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Update eva.config
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2022-02-04 09:31:33 +01:00 |
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James A. Fellows Yates
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86a9042eac
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Update eva.config
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2022-02-04 09:25:01 +01:00 |
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Combiz Khozoie
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2bdf5863d9
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Update imperial.config
Removed my contact details. Users can request help on the nf-core slack.
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2022-02-03 18:28:11 +00:00 |
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James A. Fellows Yates
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50aafc6410
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Update eva.config
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2022-02-03 17:03:10 +01:00 |
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James A. Fellows Yates
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e02196d6ad
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Update eva.config
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2022-02-03 17:02:34 +01:00 |
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James A. Fellows Yates
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0e41349324
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Update eva.config
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2022-02-03 17:01:54 +01:00 |
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James Fellows Yates
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2562a2f563
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Remove virtual free
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2022-02-02 08:06:00 +01:00 |
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James A. Fellows Yates
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8739aabbf0
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Bump markduplicates by default
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2022-02-02 08:00:13 +01:00 |
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Harshil Patel
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9792226f5c
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Update genomes.config
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2022-01-27 12:45:41 +00:00 |
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Praveen Raj S
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5c1afd56bf
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Added genome parameter
Added genome parameter to the config file
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2022-01-20 22:25:31 +01:00 |
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Harshil Patel
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cd6b8e0f17
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Add --nextclade_dataset params
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2022-01-17 16:51:55 +00:00 |
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Harshil Patel
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f26c465bd4
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Add Nextclade genome details to viralrecon genome config
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2022-01-17 11:27:10 +00:00 |
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James A. Fellows Yates
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5fd5c43906
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Update eva.config
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2022-01-14 07:03:05 +01:00 |
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Maxime U. Garcia
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61682f33b3
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Merge pull request #310 from nf-core/praveenraj2018-patch-1
Updated sentieon version through a new module file
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2022-01-10 12:04:20 +01:00 |
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