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37 commits

Author SHA1 Message Date
James A. Fellows Yates
b26e495e19
Apply suggestions from code review 2021-10-08 14:08:51 +02:00
pierrespc
2d102eafbc format docs 2021-10-08 13:46:47 +02:00
pierrespc
035ab61f61 added unlimitedtime profile to maestro; changed cache for bwa process 2021-10-08 09:05:46 +02:00
pierrespc
1621585558 improving documentation 2021-10-04 16:08:33 +02:00
James Fellows Yates
59af7f0eee Delete SHH profiles due to decommissioning 2021-08-20 10:15:39 +02:00
Edmund Miller
21e1037e0c
docs(sysbio): Add rnaseq specific docs 2021-06-17 09:18:45 -05:00
James Fellows Yates
60c66d93ac Markdown linting 2021-04-06 17:53:27 +02:00
James Fellows Yates
be1d35840d Add EVA and EAGER@EVA 2021-04-06 17:48:16 +02:00
James A. Fellows Yates
0bac3691e3
Create mpcdf.config 2021-02-14 18:07:40 +01:00
James Fellows Yates
a78aac327d Linting fixes 2021-02-14 17:58:50 +01:00
James Fellows Yates
537f52a640 Add MPI-EVA profile 2021-02-14 17:50:20 +01:00
Combiz Khozoie
a61992d144 Added institutional configs for Imperial and Imperial MEDBIO. Added institutional pipeline configs for scflow for Imperial and Imperial MEDBIO 2020-12-18 10:21:26 +00:00
James A. Fellows Yates
09cfabd37f
Add new microbiome_screening profile to docs 2020-08-11 09:20:31 +02:00
jfy133
15dad7e2e7 Add caveats for EAGER @ SHH profiles 2020-07-08 09:47:03 +02:00
James A. Fellows Yates
b2e043ab59
Add documentation for HOPS profile for eager @ SHH 2020-07-07 14:35:42 +02:00
Alexander Peltzer
6011419454
Merge pull request #154 from jfy133/master 
Update SHH nf-core/eager group-specific profiles
 2020-05-27 17:52:09 +02:00
James A. Fellows Yates
0943ba088a
Mention SHH EAGER group-specific profiles 2020-05-26 11:14:42 +02:00
James A. Fellows Yates
38e9e54932
Merge pull request #151 from jfy133/master 
Add additional custom nf-core/eager params for SHH profile
 2020-05-07 09:25:02 +02:00
James A. Fellows Yates
0a312cd2c9
Update shh.md 2020-05-07 09:17:56 +02:00
James A. Fellows Yates
4804052b23
Update SHH nf-core/eager pipeline docs 2020-05-04 21:04:17 +02:00
MaxUlysse
e6f4d58fa6 update rnafusion munin specific config 2020-04-28 17:06:04 +02:00
MaxUlysse
50a44d037b better docs and organisation of giles 2020-04-09 17:02:36 +02:00
Daniel Lundin
c8de9be701 Adding UPPMAX specific config for ampliseq 2020-03-31 15:17:24 +02:00
MaxUlysse
d4bea56f52 add munin/rnafusion specific docs + markdownlint 2020-03-11 14:23:23 +01:00
MaxUlysse
7c60096952 update docs for munin/sarek specific config 2020-03-11 14:17:24 +01:00
MaxUlysse
250035e71d fix path to config files 2020-03-11 14:11:23 +01:00
MaxUlysse
aa905cd645 add UPPMAX specific sarek config 2020-02-20 17:14:18 +01:00
James A. Fellows Yates
799f2d5788
Grammar tweak 2019-12-21 20:59:48 +01:00
James A. Fellows Yates
435a5892ea
Updated docs corresponding to 638758423a 2019-12-21 20:59:25 +01:00
Alexander Peltzer
a6d08ed646
Adjust custom pipeline config for ampliseq on BINAC 2019-12-11 16:09:44 +01:00
jfy133
1650080b6e Linting 2019-12-05 17:03:07 +01:00
jfy133
731372dac2 Added SHH specific EAGER configuration 2019-12-05 17:01:10 +01:00
Maxime Garcia
f6c2e4c65f Update docs/pipeline/sarek/munin.md 
Update conf/pipeline/sarek/munin.config

testing out module and containers collision
 2019-11-26 11:57:51 +01:00
MaxUlysse
25d4e92935 update docs 2019-11-26 11:55:36 +01:00
Maxime Garcia
b029ccaa59 Update docs/pipeline/sarek/munin.md 
Update conf/pipeline/sarek/munin.config
 2019-11-26 11:48:11 +01:00
MaxUlysse
283abcece4 update docs 2019-11-26 11:25:29 +01:00
MaxUlysse
cd1d0b5f8f Add specific sarek config base, munin specific sarek config and docs 
rename file

improve configs

remove unnecessary params
 2019-11-26 11:25:29 +01:00