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1401 commits

Author SHA1 Message Date
Nathan Watson-Haigh
cc55026751 Add singularity to PATH 2022-03-13 07:39:31 +10:30
Nathan Watson-Haigh
2f0b022571 Fixed typos 2022-03-13 00:08:42 +10:30
Nathan Watson-Haigh
dba3fb4c1d Added SAHMRI HPC profile docs 2022-03-13 00:05:34 +10:30
Nathan Watson-Haigh
b58a9952be Added SAHMRI HPC profile 2022-03-12 21:24:05 +10:30
Nathan Watson-Haigh
b638694bd0 Added SAHMRI HPC profile 2022-03-12 21:17:33 +10:30
Matiss
6c79c75eec
Merge pull request #290 from maxozo/master
added leicester profile
2022-03-11 09:21:09 +00:00
Alexander Peltzer
d0d86bfb2a
Merge pull request #339 from jfy133/rnaseq_mpcdf
Add RNASEQ specific config for MPCDF
2022-03-07 13:59:08 +01:00
James A. Fellows Yates
975fca6721
Apply suggestions from code review 2022-03-07 13:51:00 +01:00
Alexander Peltzer
5cde6f3886
Merge pull request #342 from zajacn/master
Update on md file
2022-03-07 13:44:00 +01:00
Natalia Zajac
c2e0c9e6d4 Update on md file 2022-03-07 12:59:56 +01:00
Phil Ewels
098296bce8
Merge pull request #341 from zajacn/master
Addition of FGCZ config
2022-03-07 12:48:23 +01:00
Natalia Zajac
97058995ef Update on singularity cache 2022-03-07 12:37:01 +01:00
Natalia Zajac
e07a0e548e Config Addition 2022-03-04 12:16:01 +01:00
James Fellows Yates
70318c3b2a Tweak eager settigs 2022-03-03 14:29:30 +01:00
James A. Fellows Yates
18890fc3cf
Merge pull request #3 from ilight1542/mpcdf_eager_config_update
modified mpcdf configs (general + eager)
2022-03-03 14:25:58 +01:00
James A. Fellows Yates
546393ed18
Apply suggestions from code review 2022-03-03 14:22:35 +01:00
ilight1542
5a0543e4ac
Merge branch 'rnaseq_mpcdf' into mpcdf_eager_config_update 2022-03-03 14:17:18 +01:00
ilight1542
25c644abb7 modified mpcdf configs (general + eager) 2022-03-03 13:55:02 +01:00
James Fellows Yates
7112e74b73 Tweak settings based on latest batch specs 2022-03-03 13:43:40 +01:00
James Fellows Yates
008ade7ab3 Merge branch 'rnaseq_mpcdf' of github.com:jfy133/nf-core-configs into rnaseq_mpcdf 2022-03-03 12:26:18 +01:00
James Fellows Yates
e649bfbb2e Linting 2022-03-03 12:26:14 +01:00
James A. Fellows Yates
17312604cf
Update mpcdf.config 2022-03-03 12:25:06 +01:00
James Fellows Yates
94f8cbcb84 Add rnaseq pipeline specific config for MPCDF 2022-03-03 12:20:02 +01:00
James A. Fellows Yates
341ea3664e
Merge pull request #336 from jfy133/master
Fix markdown linting from recently merged configs
2022-03-02 08:57:20 +01:00
James A. Fellows Yates
121452afad
Linting 2022-03-02 08:51:20 +01:00
James A. Fellows Yates
15a0571eae
Fix markdown 2022-03-02 08:50:42 +01:00
James A. Fellows Yates
a412510ce8
Merge pull request #335 from jfy133/master
Remove reference to now-decomissioned dracro @ MPCDF & clean up eager @EVA
2022-03-02 08:47:47 +01:00
James A. Fellows Yates
adcfe22f98
Remove draco entry to MPCDF profiles due to decomissioning 2022-03-02 08:38:55 +01:00
James A. Fellows Yates
8174fe6d52
Merge pull request #2 from nf-core/jfy133-patch
sync
2022-03-02 08:34:31 +01:00
James A. Fellows Yates
5547e45ab5
Merge branch 'master' into jfy133-patch 2022-03-02 08:28:22 +01:00
James A. Fellows Yates
ea052a7b67
Merge pull request #334 from jfy133/eva-update
eva: generalise custom SGE mem flag
2022-03-01 09:23:04 +01:00
James A. Fellows Yates
a6c12d8edc
Merge pull request #322 from U-BDS/master
Add UAB Cheaha profile
2022-03-01 08:29:54 +01:00
Austyn Trull
00deea7442 Adding cheaha to Github Actions testing yaml. 2022-02-28 10:00:13 -06:00
James A. Fellows Yates
06aaebbad1
Merge pull request #303 from PCQuilis/patch-2
added marvin.md link
2022-02-28 15:03:20 +01:00
James A. Fellows Yates
4fbebac9b3
Merge pull request #304 from PCQuilis/patch-1
Create marvin.md added marvin config
2022-02-28 15:03:07 +01:00
James A. Fellows Yates
d6f5209afc
Update marvin.md 2022-02-28 15:01:12 +01:00
James A. Fellows Yates
faf83eaeaa
Merge pull request #305 from PCQuilis/master
conf file in lowercase
2022-02-28 14:59:22 +01:00
James A. Fellows Yates
04d8a02ec9
Update nfcore_custom.config 2022-02-28 14:56:37 +01:00
James A. Fellows Yates
5c686f996f
Update main.yml 2022-02-28 14:52:32 +01:00
PCQ
1ff92db608
Merge branch 'nf-core:master' into master 2022-02-28 14:50:41 +01:00
James A. Fellows Yates
89f6484325
Merge pull request #319 from maltesemike/patch-2
Update mpcdf.config
2022-02-28 14:06:06 +01:00
James A. Fellows Yates
46f046d477
Update eva.config 2022-02-28 14:00:37 +01:00
James A. Fellows Yates
d7d9951dbf
Insert h_vmem for all nf-core pipelines 2022-02-28 14:00:16 +01:00
James A. Fellows Yates
6210ee874c
Update eva.config 2022-02-28 13:57:37 +01:00
Mei Wu
ff5750936d
Merge pull request #332 from projectoriented/hasta/markdupe_remove_cpus
picard md is single threaded
2022-02-23 16:40:57 +01:00
Mei Wu
dcba537d15 picard md is single threaded 2022-02-21 16:19:17 +01:00
Maxime U. Garcia
91b5875b44
Merge pull request #331 from nf-core/praveenraj2018-patch-1
Added: runOptions to singularity
2022-02-14 13:12:11 +01:00
Maxime U. Garcia
41e00ae8f9
Update conf/munin.config 2022-02-14 13:11:46 +01:00
Praveen Raj S
90936a5518
Added: runOptions to singularity
To bind external mount directories at runtime.
2022-02-14 12:45:20 +01:00
Combiz Khozoie
2d434c6ee5
Merge pull request #321 from nf-core/combiz-patch-1
Imperial config updates
2022-02-11 14:49:30 +00:00