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783 commits

Author SHA1 Message Date
Daniel Lundin
5a557ed7d5
Update pipeline/ampliseq.config
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
2020-03-31 15:33:12 +02:00
Daniel Lundin
79ef94de47
Update pipeline/ampliseq.config
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
2020-03-31 15:33:04 +02:00
Daniel Lundin
c8de9be701 Adding UPPMAX specific config for ampliseq 2020-03-31 15:17:24 +02:00
Phil Ewels
554ab6673c
Merge pull request #144 from MaxUlysse/UPPMAX
[UPPMAX] add s.* pattern for bianca cluster
2020-03-30 17:01:38 +02:00
MaxUlysse
db2dd4458b Merge remote-tracking branch 'upstream/master' into UPPMAX 2020-03-30 16:41:08 +02:00
MaxUlysse
8b570507cd update s 2020-03-30 16:40:11 +02:00
Gisela Gabernet
15574ab849
Merge pull request #143 from ggabernet/master
add cfc_dev profile
2020-03-23 17:46:34 +01:00
ggabernet
fa01e6c5c1 add cfc_dev to test yml 2020-03-23 17:27:36 +01:00
ggabernet
d02e2b8a36 add cfc_dev and warning for binac and cfc 2020-03-23 17:22:02 +01:00
ggabernet
c81f693f73 add cfc_dev config 2020-03-23 17:16:34 +01:00
Olga Botvinnik
f414b4c52d
Merge pull request #142 from nf-core/olgabot-patch-1
Add AaegL5.0 genome to czbiohub_aws
2020-03-17 16:46:12 -07:00
Olga Botvinnik
52369ba6ad
Add AaegL5.0 config 2020-03-17 16:45:20 -07:00
Maxime Garcia
8b1835484e
Merge pull request #141 from nf-core/MaxUlysse-patch-1
Update munin.config
2020-03-12 17:31:09 +01:00
Maxime Garcia
123132d89a
Update munin.config
fix typo
2020-03-12 17:23:55 +01:00
Phil Ewels
5a3bdcca5b
Merge pull request #139 from Emiller88/utd
fix(ganymede): use singularity/2.4.5
2020-03-11 16:54:01 +00:00
Maxime Garcia
a3934c84e0
Merge pull request #140 from MaxUlysse/Munin
Update Munin specific configs
2020-03-11 15:55:11 +01:00
Maxime Garcia
b6d52fdb89
Update conf/pipeline/sarek/munin.config 2020-03-11 15:48:29 +01:00
Maxime Garcia
0f34d757a9
Update munin.config 2020-03-11 15:48:17 +01:00
MaxUlysse
4a7f98a83b update TOC 2020-03-11 15:41:58 +01:00
MaxUlysse
6be1716797 revert * to - changes 2020-03-11 15:39:36 +01:00
MaxUlysse
d4bea56f52 add munin/rnafusion specific docs + markdownlint 2020-03-11 14:23:23 +01:00
MaxUlysse
7c60096952 update docs for munin/sarek specific config 2020-03-11 14:17:24 +01:00
MaxUlysse
250035e71d fix path to config files 2020-03-11 14:11:23 +01:00
MaxUlysse
d24a296a01 add munin/rnafusion specific config 2020-03-11 14:02:01 +01:00
MaxUlysse
dd1ddf864b update sarek munin config 2020-03-11 14:01:28 +01:00
Edmund Miller
cece853663
fix(ganymede): use singularity/2.4.5
Our 3.2.1 doesn't work right with snakemake or nextflow
2020-03-10 21:03:24 -05:00
Harshil Patel
d7564ff6e1
Merge pull request #135 from Emiller88/utd
feat: add initial ganymede config
2020-03-10 14:59:02 +00:00
Edmund Miller
c42bb07981
fix: Singularity => singularity
For some reason ours are lowercase
2020-03-10 09:55:17 -05:00
James A. Fellows Yates
d6e62cb1d0
Merge pull request #137 from marcel-keller/ebc
Add EBC to README.md
2020-03-10 10:18:33 +01:00
marcel-keller
55c17a1854
Update README.md 2020-03-10 11:09:30 +02:00
James A. Fellows Yates
e395007ba8
Add reference to EBC in README docs 2020-03-10 09:34:30 +01:00
James A. Fellows Yates
3d9e2288b7
Merge pull request #10 from nf-core/master
Get latest changes
2020-03-10 09:33:46 +01:00
Edmund Miller
b79f0f0a21
ci: add utd_gaymede to main 2020-03-09 20:11:52 -05:00
Edmund Miller
1c62395332
docs(utd_ganymede): add initial documentation 2020-03-09 20:07:46 -05:00
Edmund Miller
123c44c56d
feat: add initial ganymede config 2020-03-09 16:18:41 -05:00
James A. Fellows Yates
52214cc22d
Merge pull request #134 from marcel-keller/ebc
adding Estonian Biocentre cluster profile
2020-03-09 16:09:27 +01:00
marcel-keller
dcb478c904
Update ebc.md 2020-03-09 17:07:03 +02:00
marcel-keller
8e3803e4d7
Update ebc.config 2020-03-09 16:57:45 +02:00
marcel-keller
c00bbe982b
Update ebc.config 2020-03-09 16:51:38 +02:00
marcel-keller
3b57519500
Update ebc.config 2020-03-09 16:48:50 +02:00
marcel-keller
edc6a6aa87
Update nfcore_custom.config 2020-03-09 16:35:45 +02:00
marcel-keller
88cfe11187
Update ebc.md 2020-03-09 16:32:14 +02:00
marcel-keller
f48a4cbfb8
Update main.yml 2020-03-09 16:25:19 +02:00
marcel-keller
418f4b52b6
Create ebc.md 2020-03-09 16:23:16 +02:00
Alexander Peltzer
b8d020b78c
Update cfc.md 2020-03-09 15:12:49 +01:00
marcel-keller
de914e56ee
Create ebc.config 2020-03-09 16:08:01 +02:00
Alexander Peltzer
55fa7e4e00
Merge pull request #132 from nf-core/evanfloden-patch-1
Update google.md
2020-03-09 15:07:38 +01:00
Evan Floden
6141e008a3
Update google.md 2020-03-09 14:44:58 +01:00
Evan Floden
362c737073
Merge pull request #131 from nf-core/merge-gogole
Merge Evans Google additions
2020-03-09 13:56:24 +01:00
Alexander Peltzer
ebae81ceb3
Update main.yml
Drop CCGA, as it was removed in an intermediate merge.
2020-03-06 17:18:03 +01:00