Harshil Patel
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a098ad9e06
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Add Chris as main contact at The Crick
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2021-11-03 11:11:05 +00:00 |
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Matiss Ozols
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5222d7ed9b
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added leicester profile
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2021-10-21 19:08:06 +01:00 |
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Matiss Ozols
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1f58ea42c7
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added leicester profile
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2021-10-21 19:06:03 +01:00 |
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Matiss Ozols
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98a69683c2
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added leicester profile
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2021-10-21 19:04:48 +01:00 |
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Matiss Ozols
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f8b932ae2d
|
added leicester profile
|
2021-10-21 18:32:57 +01:00 |
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James A. Fellows Yates
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73b6b74c69
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Merge pull request #279 from pierrespc/master
Added Configuration files for running in Maestro HPC at Pasteur Institute, Paris
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2021-10-08 19:15:47 +02:00 |
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James A. Fellows Yates
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98bbc2b744
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Linting
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2021-10-08 14:11:39 +02:00 |
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James A. Fellows Yates
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b26e495e19
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Apply suggestions from code review
|
2021-10-08 14:08:51 +02:00 |
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pierrespc
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2d102eafbc
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format docs
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2021-10-08 13:46:47 +02:00 |
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pierrespc
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035ab61f61
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added unlimitedtime profile to maestro; changed cache for bwa process
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2021-10-08 09:05:46 +02:00 |
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pierrespc
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1621585558
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improving documentation
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2021-10-04 16:08:33 +02:00 |
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pierrespc
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e5d4a357c5
|
clean doc
|
2021-10-04 15:08:01 +02:00 |
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pierrespc
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136fd44e0c
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corrected docs/maestro.config
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2021-09-29 13:50:56 +02:00 |
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James A. Fellows Yates
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e8b48416bc
|
Update docs/alice.md
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2021-09-28 12:52:31 +02:00 |
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Bjørn Peare Bartholdy
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ad83430632
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Update docs/alice.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2021-09-28 12:43:54 +02:00 |
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Bjørn Peare Bartholdy
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197bd6cfb1
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Merge branch 'nf-core:master' into master
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2021-09-28 12:09:50 +02:00 |
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bbartholdy
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b6ccb46383
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add ALICE profile
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2021-09-28 12:08:27 +02:00 |
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Mei Wu
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c2d74b290a
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fix md
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2021-09-27 16:25:02 +02:00 |
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Mei Wu
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a8a2027f70
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Merge branch 'master' into hasta
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2021-09-27 16:12:23 +02:00 |
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Mei Wu
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ae0adb056f
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initial commit
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2021-09-27 16:05:19 +02:00 |
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pierrespc
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3b593d46ec
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merged two pasteur config files for maestro
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2021-09-20 15:14:50 +02:00 |
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Harshil Patel
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5068e4806f
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Merge pull request #271 from theoportlock/master
Adds Rosalind config for KCL!
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2021-09-17 13:36:19 +01:00 |
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theoportlock
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0fd5265f7b
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Updates the README
|
2021-09-17 13:21:38 +02:00 |
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pierrespc
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b9682bbc91
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requires files edited
|
2021-09-16 12:53:17 +02:00 |
|
Marc Trunjer Kusk Nielsen
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9a8644ef43
|
Update computerome.md
|
2021-09-15 11:10:02 +02:00 |
|
Marc Trunjer Kusk Nielsen
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cf899a2a4e
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Update computerome.md
|
2021-09-13 08:48:27 +02:00 |
|
Marc Trunjer Kusk Nielsen
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f46172c25b
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Update computerome.md
Update with usage, heavily inspired by the UPPMAX docs
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2021-09-13 08:16:11 +02:00 |
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Marc Trunjer Kusk Nielsen
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463df26c72
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Merge branch 'nf-core:master' into computerome
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2021-09-10 14:47:05 +02:00 |
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theoportlock
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b240142cc3
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Adds rosalind configuration
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2021-09-08 14:33:39 +02:00 |
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Rogan Grant
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54298ca0f7
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Merge branch 'nf-core:master' into master
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2021-09-04 15:37:03 -05:00 |
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Marc Trunjer Kusk Nielsen
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aad2486215
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Create computerome.md
|
2021-08-31 14:10:19 +02:00 |
|
James Fellows Yates
|
59af7f0eee
|
Delete SHH profiles due to decommissioning
|
2021-08-20 10:15:39 +02:00 |
|
Rogan Grant
|
f793ffaace
|
Updated iGenomes location
|
2021-08-03 15:10:54 -05:00 |
|
Rogan Grant
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079258ebbb
|
Minor text edits
|
2021-07-29 11:38:40 -05:00 |
|
Rogan Grant
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482478878d
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Added instructions for module loading
|
2021-07-28 18:11:10 -05:00 |
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Rogan Grant
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40170632aa
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First draft of markdown file, with instructions for installing nextflow and getting access
|
2021-07-28 13:04:32 -05:00 |
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Barry digby
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ef6b13e377
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tabs rm
|
2021-07-28 12:19:11 +01:00 |
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Barry digby
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f62298d211
|
w
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2021-07-28 11:44:06 +01:00 |
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Barry digby
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2fc8082aad
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w
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2021-07-28 11:43:39 +01:00 |
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Barry digby
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11cb6cc70d
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w
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2021-07-28 11:41:42 +01:00 |
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Barry digby
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380adf083a
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markdowwwwn
|
2021-07-28 11:41:16 +01:00 |
|
Barry digby
|
2a06d956b3
|
mdlint so picky : (
|
2021-07-27 17:18:42 +01:00 |
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Barry digby
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2b6e80561a
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Merge branch 'master' of https://github.com/nf-core/configs into
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2021-07-27 17:13:17 +01:00 |
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Barry digby
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04c0da5a2f
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nuig confg (lugh)
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2021-07-27 17:05:27 +01:00 |
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ameynert
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5224eb5574
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Updated resources folder & institute name
Local resources folder was re-organized & re-named BioinformaticsResources. Added note about viralrecon & atacseq pipeline-specific config. IGMM name-changed recently; updated to IGC.
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2021-07-21 12:15:17 +01:00 |
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Maxime U. Garcia
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30e058abf0
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Merge branch 'master' into master_kraken
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2021-07-20 09:26:56 +02:00 |
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Gisela Gabernet
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e2088a008d
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Merge branch 'master' into master
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2021-07-03 12:24:42 +02:00 |
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ggabernet
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ee2e8392ab
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add aws_tower profile
|
2021-07-03 12:17:21 +02:00 |
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Edmund Miller
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21e1037e0c
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docs(sysbio): Add rnaseq specific docs
|
2021-06-17 09:18:45 -05:00 |
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Edmund Miller
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41ae99d34a
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feat(sysbio): Add cleanup
|
2021-06-17 08:17:55 -05:00 |
|
Edmund Miller
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87c8e346e0
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fix(sysbio): Change filetype
|
2021-06-17 08:14:48 -05:00 |
|
Edmund Miller
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2a958f5ce3
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docs: Add sysbio
|
2021-06-16 21:19:38 -05:00 |
|
ikeller
|
af1e57027d
|
edit config and readme
|
2021-05-19 09:46:07 +02:00 |
|
Barry digby
|
24a4119e43
|
memory test
|
2021-04-29 14:24:57 +01:00 |
|
Barry digby
|
8340e89768
|
nuig.config first commit
|
2021-04-28 17:28:01 +01:00 |
|
Alexander Peltzer
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c12c373969
|
Merge pull request #235 from aunderwo/cambridge
Add Cambridge University HPC config
|
2021-04-25 10:40:56 +02:00 |
|
Anthony Underwood
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982d1a8f2a
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Fix markdown linting
|
2021-04-22 16:41:05 +01:00 |
|
Anthony Underwood
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29dcc160e3
|
Create cambridge.md
|
2021-04-22 16:04:29 +01:00 |
|
Anthony Underwood
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3e8f9b3d4e
|
Remove blank lines
|
2021-04-22 15:57:09 +01:00 |
|
Anthony Underwood
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f414446a88
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Add info on how to load Singularity into your path
|
2021-04-22 15:38:36 +01:00 |
|
Anthony Underwood
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b16b011bcc
|
Add ~/bin as recommended location for nextflow executable
|
2021-04-22 12:02:11 +01:00 |
|
Anthony Underwood
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cc18d213dc
|
Update sanger.md
|
2021-04-21 20:24:08 +01:00 |
|
Anthony Underwood
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40eb3e0201
|
Update sanger.md
|
2021-04-21 20:20:30 +01:00 |
|
Anthony Underwood
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7163e8723d
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Create sanger.md
|
2021-04-21 20:17:42 +01:00 |
|
Maxime Garcia
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1548690ca6
|
Update docs/uppmax.md
Co-authored-by: Pontus Freyhult <pontus_github@soua.net>
|
2021-04-21 12:27:27 +02:00 |
|
MaxUlysse
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bab9241243
|
fix: markdownlint
|
2021-04-21 11:51:14 +02:00 |
|
MaxUlysse
|
844246cc7d
|
fix: clearer usage of module
|
2021-04-21 11:28:58 +02:00 |
|
MaxUlysse
|
1a7ec56c33
|
feat: more details
|
2021-04-21 11:23:50 +02:00 |
|
MaxUlysse
|
c89877decc
|
feat: use <PIPLEINE>
|
2021-04-21 11:17:06 +02:00 |
|
MaxUlysse
|
658fa7ccda
|
fix: markdownlint
|
2021-04-21 11:08:16 +02:00 |
|
Maxime Garcia
|
79e3dd65a7
|
Apply suggestions from code review
Co-authored-by: Pontus Freyhult <pontus_github@soua.net>
|
2021-04-21 11:06:39 +02:00 |
|
Maxime Garcia
|
4eea06f0db
|
Apply suggestions from code review
Co-authored-by: Pontus Freyhult <pontus_github@soua.net>
|
2021-04-20 16:03:34 +02:00 |
|
MaxUlysse
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1c1dd952fc
|
fix: bullet list
|
2021-04-20 15:58:51 +02:00 |
|
Maxime Garcia
|
e4d2ef0984
|
Apply suggestions from code review
Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
|
2021-04-20 15:53:54 +02:00 |
|
MaxUlysse
|
4930795cab
|
feat: more complete docs
|
2021-04-20 15:38:49 +02:00 |
|
MaxUlysse
|
10abca712b
|
fix: first draft of bianca guide
|
2021-04-16 17:01:58 +02:00 |
|
James A. Fellows Yates
|
12a4518803
|
Markdown lint fix
|
2021-04-15 22:29:15 +02:00 |
|
James A. Fellows Yates
|
0fc90586e0
|
Update mpcdf.md
|
2021-04-15 22:26:37 +02:00 |
|
MaxUlysse
|
3918e0aa9d
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feat: remove kraken profile
|
2021-04-13 15:14:14 +02:00 |
|
James A. Fellows Yates
|
161c3a33d4
|
Merge branch 'master' into eva
|
2021-04-07 19:28:16 +02:00 |
|
Alexander Peltzer
|
91f50aad4e
|
Merge pull request #221 from phue/biohpc_gen
Add BioHPC Genomics config
|
2021-04-07 14:03:22 +02:00 |
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James Fellows Yates
|
8dac4ca552
|
Merge branch 'eva' of github.com:jfy133/configs into eva
|
2021-04-06 17:53:32 +02:00 |
|
James Fellows Yates
|
60c66d93ac
|
Markdown linting
|
2021-04-06 17:53:27 +02:00 |
|
James A. Fellows Yates
|
832edaa450
|
Merge branch 'master' into eva
|
2021-04-06 17:51:46 +02:00 |
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James Fellows Yates
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be1d35840d
|
Add EVA and EAGER@EVA
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2021-04-06 17:48:16 +02:00 |
|
ameynert
|
700776f759
|
Change to shared Singularity cache
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2021-03-30 16:11:15 +01:00 |
|
phue
|
7c5a0871a3
|
add note about required nextflow version
|
2021-03-29 19:36:49 +02:00 |
|
phue
|
8fc60e2e70
|
add config for biohpc_gen
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2021-03-29 19:25:58 +02:00 |
|
Gisela Gabernet
|
71a97ba316
|
Merge pull request #185 from ggabernet/master
awsbatch config update
|
2021-03-28 20:59:40 +02:00 |
|
ameynert
|
3a8e54f153
|
Removed sneaky trailing whitespace.
|
2021-03-24 13:58:10 +00:00 |
|
ameynert
|
a0d42f5153
|
Fixed code blocks for markdown linting
|
2021-03-24 13:55:31 +00:00 |
|
Phil Ewels
|
bfab371c94
|
Merge branch 'master' into master
|
2021-03-24 12:36:15 +01:00 |
|
ameynert
|
2a8ae2b214
|
Update eddie.md
|
2021-03-24 11:12:41 +00:00 |
|
ameynert
|
96fe6185a0
|
IGMM-specific docs
|
2021-03-24 11:01:41 +00:00 |
|
Asaf Peer
|
9b2d5bfead
|
Merge pull request #216 from asafpr/master
Added JAX conf
|
2021-03-24 03:31:14 -04:00 |
|
ameynert
|
791f3c95f3
|
Pipeline specific configs moving to confs/pipeline
|
2021-03-23 16:07:07 +00:00 |
|
Alexander Peltzer
|
5988c51361
|
Merge pull request #211 from DoaneAS/master
Adding WCM.config for Weill Cornell Medicine cluster
|
2021-03-23 14:58:27 +01:00 |
|
Asaf Peer
|
30c864e112
|
added JAX conf
|
2021-03-21 06:49:11 -04:00 |
|
ameynert
|
b48136a62e
|
Added pipeline-specific config files
|
2021-03-18 12:55:03 +00:00 |
|
ameynert
|
af6a6b1060
|
Details on running on eddie
Removed Conda support, Singularity by default. Added login and screen session on wild west node options.
|
2021-03-18 12:48:48 +00:00 |
|