lquayle88
|
e7ac3ecd19
|
Modified resource requests in sbc_sharc.config for sarek
|
2022-10-02 00:24:39 +01:00 |
|
lquayle88
|
9b451b53b7
|
Increased cpus and memory for GATK4_MARKDUPLICATES in sbc_sharc.config for sarek
|
2022-10-01 23:31:51 +01:00 |
|
lquayle88
|
10c1490265
|
Increased memory and time for GATK4_MARKDUPLICATES in sbc_sharc.config for sarek
|
2022-10-01 23:15:13 +01:00 |
|
lquayle88
|
dbb3b3b44b
|
Reinstated maxRetries and increased memory for GATK4_MARKDUPLICATES in sbc_sharc.config for sarek
|
2022-10-01 07:45:28 +01:00 |
|
lquayle88
|
8103718389
|
Reduced maxRetries upon error in sbc_sharc.config for sarek
|
2022-09-30 16:54:48 +01:00 |
|
Lewis Quayle
|
1eea9b464a
|
Merge branch 'nf-core:master' into sbc_sharc
|
2022-09-28 10:49:05 +01:00 |
|
Bruno Grande
|
735df9ef76
|
Merge branch 'master' into bgrande/sage-improve-downloads
|
2022-09-26 10:22:27 -07:00 |
|
Patrick Hüther
|
51ae760889
|
Merge pull request #413 from phue/biohpc_charliecloud_patch
biohpc_gen: update required modules
|
2022-09-25 23:28:04 +02:00 |
|
Lewis Quayle
|
e89114df8d
|
Merge branch 'nf-core:master' into sbc_sharc
|
2022-09-23 17:02:29 +01:00 |
|
lquayle88
|
c42a5a9a94
|
Updated resources requested by pipelines
|
2022-09-23 17:01:58 +01:00 |
|
lquayle88
|
ab1ad832df
|
Updated resource requests for compatibility with high memory nodes
|
2022-09-23 13:18:50 +01:00 |
|
Simon Pearce
|
17c3767fef
|
Update crukmi.config
Fix the singularity cache dir and add process_single.
|
2022-09-23 12:53:54 +01:00 |
|
Lewis Quayle
|
7541ffb666
|
Merge branch 'nf-core:master' into sbc_sharc
|
2022-09-23 11:09:28 +01:00 |
|
lquayle88
|
7e34beb3c9
|
Updated resource requests for compatibility with general worker nodes
|
2022-09-23 11:08:39 +01:00 |
|
Adrija Kalvisa
|
7959b14385
|
Merge branch 'nf-core:master' into master
|
2022-09-22 13:15:32 +02:00 |
|
Austyn Trull
|
5400df135d
|
Merge pull request #412 from nf-core/cheaha_env_variable_updates
Fix cheaha config due to use of incorrect variable
|
2022-09-21 13:38:24 -05:00 |
|
lquayle88
|
1471257aaf
|
Modified config for job submit rate
|
2022-09-20 19:51:31 +01:00 |
|
Lewis Quayle
|
9ee0bdc580
|
Merge branch 'nf-core:master' into sbc_sharc
|
2022-09-19 16:36:04 +01:00 |
|
lquayle88
|
adc88cfa1f
|
Added config for limiting queue size and job submit rate
|
2022-09-19 16:30:30 +01:00 |
|
Patrick Hüther
|
85aa6adeed
|
Merge branch 'master' into biohpc_charliecloud_patch
|
2022-09-18 12:52:33 +02:00 |
|
ggabernet
|
c709be3b59
|
update cfc config maintenance
|
2022-09-18 12:06:37 +02:00 |
|
Bruno Grande
|
8bb9361359
|
Improve reliability of file transfers
|
2022-09-17 10:14:04 -07:00 |
|
lquayle88
|
55971bb94d
|
Modularised error handling strategy to per pipeline basis
|
2022-09-16 17:29:08 +01:00 |
|
James A. Fellows Yates
|
ec638e62de
|
Apply suggestions from code review
Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
|
2022-09-15 09:10:29 +02:00 |
|
James A. Fellows Yates
|
b8751af6c6
|
Update conf/pipeline/mag/eva.config
|
2022-09-14 16:17:17 +02:00 |
|
James Fellows Yates
|
c0effc0366
|
Add HKI profile files
|
2022-09-14 15:34:27 +02:00 |
|
James A. Fellows Yates
|
8ea01e2041
|
Merge branch 'nf-core:master' into master
|
2022-09-14 15:01:34 +02:00 |
|
James A. Fellows Yates
|
3fcf708134
|
Merge pull request #414 from sheffield-bioinformatics-core/sbc_sharc
Added global institutional and pipeline configs for sbc_sharc
|
2022-09-14 11:46:41 +02:00 |
|
lquayle88
|
91bfa7341f
|
Made changes requested for PR
|
2022-09-14 08:42:40 +01:00 |
|
Bruno Grande
|
3d3ee391be
|
Limit the number of parallel transfers
|
2022-09-13 13:15:30 -07:00 |
|
lquayle88
|
9fef35d7d3
|
Updated pipeline configs for atacseq and chipseq
|
2022-09-13 17:08:56 +01:00 |
|
lquayle88
|
a9b62c53e0
|
Added global institutional and pipeline configs for sbc_sharc
|
2022-09-13 17:02:44 +01:00 |
|
Bruno Grande
|
abae5c4bd8
|
Decrease AWS Batch queue size
|
2022-09-12 11:40:43 -07:00 |
|
phue
|
b20f28a3c9
|
biohpc_gen: load charliecloud from lrz software tree and remove conda fallback
the biohpc_gen specific software tree is less maintained and outdated
|
2022-09-05 11:25:33 +02:00 |
|
Bruno Grande
|
80831358f9
|
Merge branch 'master' into bgrande/sage-aws
|
2022-09-01 13:21:36 -07:00 |
|
Lara Ianov
|
8448bb9a1e
|
re-define TMPDIR
|
2022-09-01 10:12:07 -05:00 |
|
Simon Pearce
|
2c738cae33
|
Update crukmi.config
|
2022-09-01 11:24:11 +01:00 |
|
Simon Pearce
|
a8faeda141
|
Update crukmi.config
|
2022-09-01 11:23:07 +01:00 |
|
SPearce
|
800931bff2
|
Add Sarek specific config
|
2022-09-01 11:13:23 +01:00 |
|
Simon Pearce
|
ba1d3f24cc
|
Update crukmi.config
|
2022-09-01 11:07:14 +01:00 |
|
Simon Pearce
|
81768e16a9
|
Merge branch 'nf-core:master' into crukmi
|
2022-09-01 10:20:25 +01:00 |
|
Simon Pearce
|
14a97ad0e8
|
Merge branch 'master' into crukmi
|
2022-09-01 10:07:24 +01:00 |
|
James Fellows Yates
|
b22e8b79c7
|
Fix cheaha config due to use of environmental variable
|
2022-09-01 11:01:23 +02:00 |
|
Kalayanee Chairat
|
9681716205
|
Update adcra.config
Fixing typo
|
2022-09-01 15:11:18 +07:00 |
|
Kalayanee Chairat
|
700f14d828
|
Merge pull request #1 from nf-core/master
Merging from master
|
2022-09-01 15:07:43 +07:00 |
|
Simon Pearce
|
864da0b5be
|
Merge branch 'master' into crukmi
|
2022-08-31 18:19:47 +01:00 |
|
Bruno Grande
|
9a37404a04
|
Merge branch 'master' into bgrande/sage-aws
|
2022-08-31 09:22:07 -07:00 |
|
Bruno Grande
|
179b343bd2
|
Incorporate resource limits
|
2022-08-31 09:18:27 -07:00 |
|
Bruno Grande
|
c883723559
|
Simplify resource adjustments
|
2022-08-31 09:10:30 -07:00 |
|
SPearce
|
1e1ca1e96b
|
Incorporating executor options
|
2022-08-31 15:35:57 +01:00 |
|