millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 00:26:03 +00:00
Code Issues Releases Packages Activity

Commit graph

  • c5e4ac2025
         Update scflow.config Combiz Khozoie 2022-02-11 00:25:44 +0000
  • 34d9e7a967
         Update imperial.md Combiz Khozoie 2022-02-11 00:08:08 +0000
  • 5aa1abda26
         Delete imperial_mb.md Combiz Khozoie 2022-02-11 00:07:05 +0000
  • 14c7662762
         Update imperial.md Combiz Khozoie 2022-02-10 23:49:43 +0000
  • 38a05a6531
         Update imperial.config Combiz Khozoie 2022-02-10 23:46:14 +0000
  • e1d0bf0cd2
         Delete imperial_mb.config Combiz Khozoie 2022-02-10 23:44:49 +0000
  • fe5474a029
         Update imperial.config Combiz Khozoie 2022-02-10 23:02:47 +0000
  • 8fa6ab9b35
         Merge pull request #323 from stevin-wilson/patch-1 Harshil Patel 2022-02-10 19:17:47 +0000
  • 92424ee2c3
         Merge pull request #328 from jfy133/eva-update James A. Fellows Yates 2022-02-10 17:23:04 +0100
  • 88ddc9eee7 fffff James Fellows Yates 2022-02-10 11:34:57 +0100
  • d7d0f5cecc Change base time James Fellows Yates 2022-02-10 11:32:49 +0100
  • dbd78f8075 Re add . James Fellows Yates 2022-02-10 11:26:18 +0100
  • dd94895f16 remove quotes James Fellows Yates 2022-02-10 11:22:45 +0100
  • 39c2d9b25b Oops James Fellows Yates 2022-02-10 11:19:16 +0100
  • c0ee3225ad Add times for 365d James Fellows Yates 2022-02-10 11:02:52 +0100
  • 192839c8be
         Merge pull request #327 from nf-core/TCLamnidis-patch-2 James A. Fellows Yates 2022-02-10 10:22:53 +0100
  • fa4075c2a0
         Removed all time limits Thiseas C. Lamnidis 2022-02-10 10:00:18 +0100
  • 64355b84d2
         Merge pull request #325 from jfy133/eva-update James A. Fellows Yates 2022-02-08 11:28:36 +0100
  • 2b06293f64
         Read add empty BAM exit code for qualitmap 255 James A. Fellows Yates 2022-02-08 11:15:17 +0100
  • 8d286e3b69
         Merge pull request #324 from jfy133/eva-update James A. Fellows Yates 2022-02-06 20:02:03 +0100
  • 8c5a54ac9f
         Update conf/pipeline/eager/eva.config James A. Fellows Yates 2022-02-06 19:37:53 +0100
  • aa525c6ebf
         Allow exit code 1 retry for all java processes James A. Fellows Yates 2022-02-06 09:07:53 +0100
  • dbb71161c5
         Added ARTIC v4.1 primer set information Stevin Wilson 2022-02-04 15:31:51 -0500
  • 8ff6f302b4
         Merge pull request #320 from rbpisupati/cbe-singularity Patrick Hüther 2022-02-04 10:40:16 +0100
  • 7bf6f284fa cbe: lower the threshold for switching to m queue phue 2022-02-04 10:33:00 +0100
  • 49810a69b3 cbe: add gpu support phue 2022-02-04 10:31:58 +0100
  • a6dd3aa0f1 cbe: update recommended nextflow version in docs phue 2022-02-04 10:21:52 +0100
  • 52b6f7da21 update anaconda module phue 2022-02-04 10:18:59 +0100
  • c3db683535 Merge branch 'master' of github.com:nf-core/configs into cbe-singularity phue 2022-02-04 10:14:52 +0100
  • b5ab4a8258 Revert "changes to cbe module loading" phue 2022-02-04 10:13:12 +0100
  • 81fe720b00
         Update eva.config James A. Fellows Yates 2022-02-04 09:31:33 +0100
  • 86a9042eac
         Update eva.config James A. Fellows Yates 2022-02-04 09:25:01 +0100
  • 81a273c730
         Update imperial_mb.config Combiz Khozoie 2022-02-03 18:31:02 +0000
  • 2bdf5863d9
         Update imperial.config Combiz Khozoie 2022-02-03 18:28:11 +0000
  • 731f86e7f1
         Update imperial_mb.config Combiz Khozoie 2022-02-03 18:27:49 +0000
  • 453080f282
         Update imperial.config Combiz Khozoie 2022-02-03 18:26:30 +0000
  • 50aafc6410
         Update eva.config James A. Fellows Yates 2022-02-03 17:03:10 +0100
  • e02196d6ad
         Update eva.config James A. Fellows Yates 2022-02-03 17:02:34 +0100
  • 0e41349324
         Update eva.config James A. Fellows Yates 2022-02-03 17:01:54 +0100
  • 7c1c4c7fa4 changes to cbe module loading rbpisupati 2022-02-02 22:42:13 +0100
  • cc380ce9a1
         Update mpcdf.config Michael Borg 2022-02-02 13:33:03 +0100
  • 2562a2f563 Remove virtual free James Fellows Yates 2022-02-02 08:06:00 +0100
  • 8739aabbf0
         Bump markduplicates by default James A. Fellows Yates 2022-02-02 08:00:13 +0100
  • 1c9e1bf8a1 Fixing syntax in cheaha profile Austyn Trull 2022-01-28 14:18:57 -0600
  • f876227a38 added note on screen, conda, and interactive partitions Lara Ianov 2022-01-28 12:18:11 -0600
  • 9c0d550222
         max_memory increase to reflect largemem Lara Ianov 2022-01-28 11:45:13 -0600
  • 06541411dd Initial commit of cheaha profile Austyn Trull 2022-01-28 11:37:42 -0600
  • 9792226f5c
         Update genomes.config Harshil Patel 2022-01-27 12:45:41 +0000
  • 5c1afd56bf
         Added genome parameter Praveen Raj S 2022-01-20 22:25:31 +0100
  • c49abc2e61
         Merge pull request #316 from drpatelh/nextclade Harshil Patel 2022-01-17 17:35:31 +0000
  • cd6b8e0f17 Add --nextclade_dataset params Harshil Patel 2022-01-17 16:51:55 +0000
  • a680207b55
         Merge pull request #315 from drpatelh/nextclade Harshil Patel 2022-01-17 11:46:47 +0000
  • f26c465bd4 Add Nextclade genome details to viralrecon genome config Harshil Patel 2022-01-17 11:27:10 +0000
  • 4546e0f389
         Merge pull request #314 from jfy133/master James A. Fellows Yates 2022-01-14 07:40:56 +0100
  • 5fd5c43906
         Update eva.config James A. Fellows Yates 2022-01-14 07:03:05 +0100
  • 61682f33b3
         Merge pull request #310 from nf-core/praveenraj2018-patch-1 Maxime U. Garcia 2022-01-10 12:04:20 +0100
  • bfa7e0f8d7
         Merge pull request #313 from nf-core/ameynert-patch-1 ameynert 2022-01-06 10:38:13 +0000
  • 0f56588acc
         Added memory & cluster options specification for eddie sarek config ameynert 2022-01-06 10:15:34 +0000
  • 94d5a1b5f2
         Update nihbiowulf.config kevbrick-patch-1 Kevin Brick 2021-12-23 15:36:38 -0500
  • 53ab5ee34f
         Updated sentieon version through a new module file praveenraj2018 2021-12-21 15:21:59 +0100
  • 1abb1c2d95
         Merge pull request #309 from kevbrick/master Kevin Brick 2021-12-20 13:05:19 -0500
  • 82c7d553a7
         Update bind-paths Kevin Brick 2021-12-20 11:29:09 -0500
  • afb6fbb767
         Trailing spaces Kevin Brick 2021-12-17 00:46:50 -0500
  • 05f7b59573
         Update nihbiowulf.md Kevin Brick 2021-12-17 00:44:39 -0500
  • 74448de49e
         Update main.yml Kevin Brick 2021-12-17 00:40:43 -0500
  • e523e28861
         Update README.md Kevin Brick 2021-12-17 00:39:21 -0500
  • de6d3bdd5f
         Update nfcore_custom.config Kevin Brick 2021-12-17 00:38:07 -0500
  • 9cf4f69ff3
         Add files via upload Kevin Brick 2021-12-17 00:37:11 -0500
  • 87e4ece034
         Add files via upload Kevin Brick 2021-12-17 00:36:51 -0500
  • 38295dfbbd
         Merge pull request #308 from vsmalladi/master Venkat Malladi 2021-12-16 14:11:53 -0600
  • 306c802b4e
         Fix name of Params Venkat Malladi 2021-12-16 09:27:23 -0600
  • 698555f801
         Rename marvin.conf to marvin.config PCQ 2021-12-15 14:44:05 +0100
  • 58fe1a5808
         Merge pull request #307 from nf-core/praveenraj2018-patch-1 Maxime U. Garcia 2021-12-14 21:38:15 +0100
  • 00a3ed0fa6
         Formatting praveenraj2018 2021-12-14 21:24:18 +0100
  • 0557f4e062
         Renamed star_index directory praveenraj2018 2021-12-14 21:15:12 +0100
  • e4410065f3
         Merge pull request #306 from praveenraj2018/rnavar_munin praveenraj2018 2021-12-14 16:10:59 +0100
  • 5e92e2ef11
         Update conf/pipeline/rnavar/munin.config Maxime U. Garcia 2021-12-14 16:10:31 +0100
  • 4c6e7262c2 Updated README.md Praveen 2021-12-14 04:04:17 +0100
  • cc1fe5b5a0 Addressed review feedback Praveen 2021-12-14 03:58:54 +0100
  • b4d5330c0e Added rnavar pipeline config for Munin Praveen 2021-12-14 03:52:37 +0100
  • 3a61adb69b
         Rename Marvin.conf to marvin.conf PCQ 2021-12-13 11:38:48 +0100
  • 2d02848075
         added marvin.md link PCQ 2021-12-10 17:40:44 +0100
  • a72f1a243c
         Create marvin.md PCQ 2021-12-10 17:39:32 +0100
  • a8bdd102e2
         added path to Marvin.conf PCQ 2021-12-10 17:13:47 +0100
  • 50d90cd686
         Marvin Cluster addition PCQ 2021-12-10 17:11:43 +0100
  • 71b17ff970
         Merge pull request #301 from jfy133/eva James A. Fellows Yates 2021-12-07 11:04:33 +0100
  • 55f452d81e
         Update eva.config James A. Fellows Yates 2021-12-07 09:27:28 +0100
  • f7b5a8e800
         Merge pull request #300 from jfy133/eva James A. Fellows Yates 2021-12-03 11:16:24 +0100
  • e8252ad61c Reintroduce bionode8, bump overhead for flagstat James Fellows Yates 2021-12-03 08:36:31 +0100
  • f8246b8554
         Merge pull request #299 from jfy133/eva James A. Fellows Yates 2021-12-02 10:57:44 +0100
  • 06b40798c0 Exclude bionode8 James Fellows Yates 2021-12-02 10:35:35 +0100
  • 7a49a66b36
         Merge pull request #298 from vsmalladi/azure Venkat Malladi 2021-11-18 23:52:24 -0600
  • 61c7a9c4f1
         chore: Change to one template Edmund Miller 2021-11-18 21:23:21 -0600
  • 2c45f2a124
         Apply suggestions from code review Edmund Miller 2021-11-18 21:18:34 -0600
  • d722e7206e Fix readme to remove blob account. Venkat Malladi 2021-11-18 18:06:54 -0600
  • c0bf71bb6c Merge branch 'master' into azure Venkat Malladi 2021-11-18 18:06:04 -0600
  • 0725e8d382
         Merge pull request #225 from jfy133/doc-update Phil Ewels 2021-11-19 00:56:50 +0100
  • 4785ceccba
         Merge pull request #245 from ikeller/unibe_ibu Phil Ewels 2021-11-19 00:56:25 +0100
  • 291fcb20a5
         Merge pull request #297 from vsmalladi/azure Phil Ewels 2021-11-19 00:55:54 +0100
  • 1312949768 Merge branch 'azure' of github.com:vsmalladi/configs into azure Venkat Malladi 2021-11-18 17:55:37 -0600