drpatelh
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0d8bd42cca
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Create index in bwa directory
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2021-02-02 12:34:23 +00:00 |
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Harshil Patel
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f126200610
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Merge pull request #133 from nf-core/MaxUlysse-patch-1-1
Update bwa/index container
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2021-02-02 12:26:31 +00:00 |
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Maxime Garcia
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e7474c3d98
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Update main.nf
Use same tag
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2021-02-02 12:13:14 +01:00 |
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Kevin Menden
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4301afb771
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Merge pull request #132 from drpatelh/bowtie
Rename bowtie_index to bowtie_build
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2021-02-02 07:47:37 +01:00 |
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drpatelh
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f84e5b59ca
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Rename bowtie_index to bowtie_build
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2021-02-01 17:53:31 +00:00 |
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Harshil Patel
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0a41130276
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Merge pull request #131 from KevinMenden/fastp-module
Adding fastp module
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2021-02-01 13:43:35 +00:00 |
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Harshil Patel
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e851da8640
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Merge pull request #130 from KevinMenden/master
Adding a QUAST module
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2021-02-01 13:17:57 +00:00 |
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Kevin Menden
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0bd8506ea1
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Update tests/software/quast/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-02-01 14:04:08 +01:00 |
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Kevin Menden
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05370b5e16
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Update tests/software/quast/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-02-01 14:03:49 +01:00 |
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Kevin Menden
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f6c4e9d9c1
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Update software/quast/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-02-01 14:03:36 +01:00 |
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Kevin Menden
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9885da628e
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Update software/quast/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-02-01 14:03:22 +01:00 |
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Kevin Menden
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c807c6c438
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Update software/quast/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-02-01 14:03:15 +01:00 |
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Kevin Menden
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d88bf3bdda
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Update software/quast/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-02-01 14:03:06 +01:00 |
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Kevin Menden
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c43fe85a0c
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Update software/quast/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-02-01 14:02:57 +01:00 |
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kevinmenden
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e9e795633d
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added fastp tests
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2021-02-01 14:02:06 +01:00 |
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kevinmenden
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038381de99
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added fastp module
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2021-02-01 13:54:08 +01:00 |
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kevinmenden
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a342296d70
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fixed test md5s
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2021-02-01 13:36:25 +01:00 |
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kevinmenden
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b5298f94d8
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refactored quast module
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2021-02-01 13:13:21 +01:00 |
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Harshil Patel
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c74d8a1711
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Merge pull request #128 from JoseEspinosa/bowtie2_viralrecon
Bowtie2 viralrecon 2
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2021-02-01 09:56:11 +00:00 |
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Harshil Patel
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2c962f34df
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Merge pull request #110 from luslab/master
Add SEACR module containing a single CALLPEAK process
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2021-02-01 09:48:15 +00:00 |
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Chris Cheshire
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41233763ae
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Removed test-datasets submodule
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2021-02-01 09:46:24 +00:00 |
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kevinmenden
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956bf22a58
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fixed bug; updated meta.yml
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2021-02-01 07:44:26 +01:00 |
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JoseEspinosa
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8fb6b80abd
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Fixing some md5 hashes
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2021-01-30 23:08:17 +01:00 |
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JoseEspinosa
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3c95af9e50
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Merge branch 'bowtie2_viralrecon' of https://github.com/JoseEspinosa/modules into bowtie2_viralrecon
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2021-01-30 22:53:53 +01:00 |
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JoseEspinosa
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177693de49
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Adding worflow yml for bowtie2_align and bowtie2_build
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2021-01-30 22:53:27 +01:00 |
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Harshil Patel
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eadbea4b83
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Merge pull request #127 from JoseEspinosa/bowtie2_viralrecon
Bowtie2 viralrecon
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2021-01-30 13:22:30 +00:00 |
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Harshil Patel
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eab633776e
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Update software/bowtie2/build/meta.yml
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2021-01-30 13:21:56 +00:00 |
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JoseEspinosa
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986b72cee9
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Fix error on previous commit
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2021-01-30 09:35:25 +01:00 |
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JoseEspinosa
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29989035a5
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Remove author entry from yml (copy-pasted :P)
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2021-01-30 09:29:53 +01:00 |
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JoseEspinosa
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ddbe8055c2
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Adding tests
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2021-01-29 19:31:33 +01:00 |
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JoseEspinosa
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43f9815621
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Adding module bowtie2 align
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2021-01-29 19:29:32 +01:00 |
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Harshil Patel
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bd59706d51
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Merge pull request #118 from heuermh/dsh-bio
Added dsh-bio filter-bed as dsh_filterbed
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2021-01-29 18:15:24 +00:00 |
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Harshil Patel
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7ab3217f16
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Update software/dsh/filterbed/main.nf
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2021-01-29 18:14:13 +00:00 |
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Harshil Patel
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cf5e38f48b
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Update software/dsh/filterbed/main.nf
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2021-01-29 18:14:08 +00:00 |
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Harshil Patel
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0fcbc4233c
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Merge pull request #126 from JoseEspinosa/samtools_viralrecon
Samtools viralrecon
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2021-01-29 18:12:48 +00:00 |
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Harshil Patel
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eb7a3861db
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Update software/samtools/mpileup/meta.yml
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2021-01-29 18:12:17 +00:00 |
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JoseEspinosa
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2f9934c563
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Adding bowtie2_build module
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2021-01-29 18:57:27 +01:00 |
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JoseEspinosa
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720db2bed5
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Fixing samtools_mpileup test
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2021-01-29 18:21:03 +01:00 |
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JoseEspinosa
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13e9f81160
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Fixing lint tests
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2021-01-29 18:01:58 +01:00 |
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JoseEspinosa
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22dcdc692d
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Adding samtools_mpileup module
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2021-01-29 17:58:42 +01:00 |
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JoseEspinosa
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3eedca9bb4
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Add samtools_view
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2021-01-29 17:18:45 +01:00 |
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kevinmenden
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34cfc32c29
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added quast workflow
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2021-01-29 16:15:45 +01:00 |
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kevinmenden
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e8bd730164
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added quast tests
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2021-01-29 16:14:33 +01:00 |
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kevinmenden
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10bb80743a
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started adding quast modules
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2021-01-29 16:06:14 +01:00 |
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Michael L Heuer
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d2723408ad
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Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-29 09:01:21 -06:00 |
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Harshil Patel
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29ce4e670f
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Merge pull request #124 from KevinMenden/pangolin-module
Added pangolin module
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2021-01-29 11:58:54 +00:00 |
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kevinmenden
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d30994c6ef
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Merge branch 'pangolin-module' of https://github.com/KevinMenden/modules into pangolin-module
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2021-01-29 12:54:38 +01:00 |
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kevinmenden
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bacebdfb47
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added pangolin workf
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2021-01-29 12:53:51 +01:00 |
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kevinmenden
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44df90a795
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Merge branch 'master' of https://github.com/nf-core/modules into pangolin-module
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2021-01-29 12:50:24 +01:00 |
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Harshil Patel
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5da41ecb26
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Merge pull request #122 from KevinMenden/master
Added tests and meta.yml files for Salmon
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2021-01-29 11:49:03 +00:00 |
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