Matthias De Smet
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c390385cf5
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revert wgsmetrics'
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2022-05-22 06:44:17 +02:00 |
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Matthias De Smet
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4da143ce62
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add tests
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2022-05-22 06:44:17 +02:00 |
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Matthias De Smet
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d6a0238cd1
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Merge branch 'master' into update/picard
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2022-05-21 08:34:33 +02:00 |
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Matthias De Smet
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a5a6973fcf
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picard: make reference sequence optional
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2022-05-21 08:33:49 +02:00 |
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Ramprasad Neethiraj
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995bf88327
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add stub
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2022-05-20 17:10:09 +02:00 |
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Ramprasad Neethiraj
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635edc0022
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fix typo
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2022-05-20 17:07:42 +02:00 |
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Mahesh Binzer-Panchal
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7a83ca3070
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Merge pull request #1682 from mahesh-panchal/mash_screen
Add mash screen
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2022-05-20 16:47:36 +02:00 |
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Ramprasad Neethiraj
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2542c9d176
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add tests
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2022-05-20 16:46:19 +02:00 |
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Mahesh Binzer-Panchal
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2926ec0abb
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Add mash screen
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2022-05-20 13:23:11 +00:00 |
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Ramprasad Neethiraj
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c70b169f61
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create modules
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2022-05-20 13:34:54 +02:00 |
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SusiJo
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9096be5464
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improve readability
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2022-05-20 13:29:49 +02:00 |
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SusiJo
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bdf222649d
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remove unnecessary if statement
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2022-05-20 13:25:57 +02:00 |
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SusiJo
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153c900d0e
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refine comment
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
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2022-05-20 13:08:38 +02:00 |
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SusiJo
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2e5aa0dbb4
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refine comment
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
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2022-05-20 13:08:26 +02:00 |
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SusiJo
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3b3921cfa3
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refine comment
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
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2022-05-20 13:07:57 +02:00 |
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SusiJo
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00077c36c8
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removed unnecessary fasta for tumor_only_bam
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2022-05-20 13:06:16 +02:00 |
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SusiJo
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f392c4bed5
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removed params section & added description fasta
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2022-05-20 13:05:43 +02:00 |
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SusiJo
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129270d7bc
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adjusted conda env & singularity container
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2022-05-20 10:37:46 +02:00 |
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SusiJo
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dd2f48810a
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Merge branch 'nf-core:master' into cnvkit_bam
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2022-05-20 09:14:21 +02:00 |
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SusiJo
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3d57caa683
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added test & corrected cram input
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2022-05-20 09:13:27 +02:00 |
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SusiJo
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5a1297cc7d
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added optional pdf/png outputs
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2022-05-20 09:12:47 +02:00 |
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SusiJo
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064712c4ea
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added cram_bam conversion & tumor_only check
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2022-05-20 09:11:45 +02:00 |
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Rike
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bb3e64647b
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Merge remote-tracking branch 'origin/master' into gatk_filter
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2022-05-18 15:52:47 +02:00 |
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FriederikeHanssen
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c8ccfe3710
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Merge pull request #1675 from FriederikeHanssen/gatk_cnnscore
Gatk cnnscore
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2022-05-18 15:44:52 +02:00 |
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FriederikeHanssen
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44e9cf56fa
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Merge branch 'master' into gatk_cnnscore
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2022-05-18 15:32:36 +02:00 |
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Rike
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11d514cd30
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Merge remote-tracking branch 'origin/gatk_cnnscore' into gatk_cnnscore
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2022-05-18 14:33:15 +02:00 |
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Rike
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e8221cf98e
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Merge remote-tracking branch 'origin' into gatk_cnnscore
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2022-05-18 14:27:25 +02:00 |
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Rike
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10840a0562
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Conda not suported
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2022-05-18 14:26:21 +02:00 |
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James A. Fellows Yates
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9f8d6cbdd5
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Merge pull request #1616 from jianhong/motus_profile
Motus profile
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2022-05-18 12:26:31 +01:00 |
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James A. Fellows Yates
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965fabdd54
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Merge branch 'master' into motus_profile
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2022-05-18 11:25:48 +01:00 |
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Rike
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5ae757121f
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Add indices and meta
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2022-05-17 23:38:26 +02:00 |
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FriederikeHanssen
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fdf1bec20b
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Merge branch 'master' into gatk_cnnscore
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2022-05-17 23:07:09 +02:00 |
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Rike
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05837a011d
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Add comment
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2022-05-17 23:06:52 +02:00 |
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Rike
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15fba1dd7c
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add filter variant tranches
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2022-05-17 23:01:24 +02:00 |
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Rike
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afa0f2a995
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update test
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2022-05-17 22:53:41 +02:00 |
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Rike
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265fd882ca
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update test
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2022-05-17 19:44:48 +02:00 |
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Rike
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5f63904a50
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update test
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2022-05-17 19:37:18 +02:00 |
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Rike
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05611cf27c
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update pytest
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2022-05-17 19:11:05 +02:00 |
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Rike
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e0fcbb428d
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Add CNNScoreVariants
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2022-05-17 19:09:46 +02:00 |
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Matthias De Smet
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856a8712f8
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Merge pull request #1667 from matthdsm/biobambam/bammerge
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2022-05-17 17:09:06 +02:00 |
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Jose Espinosa-Carrasco
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3614c19206
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Merge branch 'master' into biobambam/bammerge
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2022-05-17 15:07:37 +02:00 |
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Jose Espinosa-Carrasco
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fbf20c1e36
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Merge pull request #1673 from nvnieuwk/new-module-bedtools/split
new module: bedtools split
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2022-05-17 14:45:07 +02:00 |
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Nicolas Vannieuwkerke
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6342f5b099
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added bedtools split
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2022-05-17 14:24:32 +02:00 |
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Matthias De Smet
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f48790a728
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replace regex with fixed extensions
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2022-05-17 09:54:06 +02:00 |
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Matthias De Smet
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94733a85c0
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Update modules/biobambam/bammerge/main.nf
Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>
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2022-05-17 09:46:19 +02:00 |
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Matthias De Smet
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c5627e0274
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fix config
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2022-05-17 09:09:19 +02:00 |
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Matthias De Smet
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743e95c61b
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fix config
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2022-05-17 09:01:02 +02:00 |
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Matthias De Smet
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d3ddc2221a
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Merge branch 'master' into biobambam/bammerge
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2022-05-17 08:26:28 +02:00 |
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Matthias De Smet
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53c4a2d1cd
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Merge pull request #1657 from sysbiocoder/hmtnote
Hmtnote
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2022-05-17 08:21:32 +02:00 |
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Matthias De Smet
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6be91ce82d
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fix optional output detection
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2022-05-17 08:20:47 +02:00 |
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