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2711 commits 30 branches 0 tags 142 MiB
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Author SHA1 Message Date
SusiJo
5a1297cc7d added optional pdf/png outputs 2022-05-20 09:12:47 +02:00
SusiJo
064712c4ea added cram_bam conversion & tumor_only check 2022-05-20 09:11:45 +02:00
James A. Fellows Yates
9f8d6cbdd5
Merge pull request #1616 from jianhong/motus_profile 
Motus profile
 2022-05-18 12:26:31 +01:00
James A. Fellows Yates
965fabdd54
Merge branch 'master' into motus_profile 2022-05-18 11:25:48 +01:00
Matthias De Smet
856a8712f8
Merge pull request #1667 from matthdsm/biobambam/bammerge 2022-05-17 17:09:06 +02:00
Jose Espinosa-Carrasco
3614c19206
Merge branch 'master' into biobambam/bammerge 2022-05-17 15:07:37 +02:00
Jose Espinosa-Carrasco
fbf20c1e36
Merge pull request #1673 from nvnieuwk/new-module-bedtools/split 
new module: bedtools split
 2022-05-17 14:45:07 +02:00
Nicolas Vannieuwkerke
6342f5b099 added bedtools split 2022-05-17 14:24:32 +02:00
Matthias De Smet
f48790a728
replace regex with fixed extensions 2022-05-17 09:54:06 +02:00
Matthias De Smet
94733a85c0
Update modules/biobambam/bammerge/main.nf 
Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>
 2022-05-17 09:46:19 +02:00
Matthias De Smet
c5627e0274 fix config 2022-05-17 09:09:19 +02:00
Matthias De Smet
743e95c61b fix config 2022-05-17 09:01:02 +02:00
Matthias De Smet
d3ddc2221a
Merge branch 'master' into biobambam/bammerge 2022-05-17 08:26:28 +02:00
Matthias De Smet
53c4a2d1cd
Merge pull request #1657 from sysbiocoder/hmtnote 
Hmtnote
 2022-05-17 08:21:32 +02:00
Matthias De Smet
6be91ce82d fix optional output detection 2022-05-17 08:20:47 +02:00
Subazini TK
79c2c529fc
Merge branch 'master' into hmtnote 2022-05-17 08:05:47 +02:00
JIANHONG OU
671bacb6df
Merge branch 'master' into motus_profile 2022-05-16 17:34:49 -04:00
Matthias De Smet
d0db186e84
Merge branch 'master' into biobambam/bammerge 2022-05-16 20:52:48 +02:00
Matthias De Smet
a79b9adeee address review comments 2022-05-16 20:51:39 +02:00
Gregor Sturm
9036b90eb6
Merge pull request #1178 from veitveit/maxquant 
New module: Maxquant
 2022-05-16 19:32:23 +02:00
Subazini TK
00204fa82b Update main.nf 2022-05-16 15:20:15 +00:00
Subazini TK
252fcb17c4 Update main.nf 2022-05-16 15:20:15 +00:00
Subazini TK
cb21fa0c96 Update main.nf 2022-05-16 15:20:15 +00:00
Subazini TK
cbae48d06d Update nextflow.config 2022-05-16 15:20:15 +00:00
Subazini TK
541f403963 Update main.nf 2022-05-16 15:20:15 +00:00
Subazini TK
69243db3d7 Update test.yml 2022-05-16 15:20:15 +00:00
Subazini TK
c8c6fdd2e3 Update main.nf 2022-05-16 15:20:15 +00:00
Subazini TK
a0b46d3f03 Update meta.yml 2022-05-16 15:20:15 +00:00
Subazini TK
eaf81f6835 Update meta.yml 2022-05-16 15:20:15 +00:00
Subazini TK
fb66e8ba97 Update test.yml 2022-05-16 15:20:15 +00:00
Subazini TK
f0713f4723 Update test.yml 2022-05-16 15:20:15 +00:00
Subazini TK
1c42c97504 Update meta.yml 2022-05-16 15:20:15 +00:00
Subazini TK
8b4c5742c9 Update main.nf 2022-05-16 15:20:15 +00:00
Subazini TK
2a15bc2ac0 Update main.nf 2022-05-16 15:20:15 +00:00
Subazini TK
78dc1af1e6 Update main.nf 2022-05-16 15:20:15 +00:00
Subazini TK
060d33f2c3 Update test.yml 2022-05-16 15:20:15 +00:00
Subazini TK
df8f1eae69 Update test.yml 2022-05-16 15:20:15 +00:00
sysbiocoder
26f026683b hmtnote 2022-05-16 15:20:15 +00:00
sysbiocoder
31fc8b560f hmtnote 2022-05-16 15:20:15 +00:00
sysbiocoder
fe009b738a modified: tests/config/pytest_modules.yml 2022-05-16 15:20:15 +00:00
Veit Schwämmle
85345e5f61
Merge branch 'master' into maxquant 2022-05-16 16:06:32 +02:00
Praveen Raj S
673e3b3a3f
Merge pull request #1656 from praveenraj2018/process_lable_markdup 
Changed process label to Medium for GATK4/MarkDuplicates
 2022-05-16 16:02:50 +02:00
Praveen Raj S
df2620cfc7
Merge branch 'master' into process_lable_markdup 2022-05-16 15:53:26 +02:00
Matthias De Smet
98f204fd1f
Update modules/biobambam/bammerge/main.nf 
Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>
 2022-05-16 15:13:54 +02:00
Matthias De Smet
cdbe648400 align 2022-05-16 14:44:32 +02:00
Matthias De Smet
2cca156fed linting 2022-05-16 14:42:34 +02:00
Matthias De Smet
af69ea749d add module: biobambam/bammerge 2022-05-16 14:39:58 +02:00
veitveit
12815af53e ran prettier 2022-05-16 14:30:40 +02:00
Veit Schwämmle
74a1c1400e
Merge branch 'master' into maxquant 2022-05-16 13:26:35 +02:00
Jasmin F
c6fae2ae6d
Merge pull request #1602 from jasmezz/antismashlite 
Add AntiSMASH-lite
 2022-05-16 12:02:08 +02:00