millironx/nf-core_modules
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103 commits 30 branches 0 tags 142 MiB
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Author SHA1 Message Date
Phil Ewels
81b1d6081c
Merge pull request #31 from FelixKrueger/hisat2 
Added HISAT2 module and test workflow
 2020-07-11 13:29:02 +02:00
Phil Ewels
7ef2a97882
Update tools/hisat2/main.nf 2020-07-11 13:28:41 +02:00
Phil Ewels
23c2fd8520
Apply suggestions from code review 2020-07-11 13:27:56 +02:00
Phil Ewels
edda7433d3
Merge pull request #30 from FelixKrueger/bowtie2 
Added Bowtie2 module and test workflow
 2020-07-11 13:27:20 +02:00
Phil Ewels
2fee617b5b
Update tools/bowtie2/main.nf 2020-07-11 13:27:05 +02:00
Phil Ewels
ccea438b49
Update tools/bowtie2/main.nf 2020-07-11 13:26:50 +02:00
Phil Ewels
a1ff2bd677
Merge pull request #29 from FelixKrueger/multiqc 
Added DSL2 module for MultiQC
 2020-07-11 13:26:01 +02:00
Phil Ewels
5aaacf8173
Update tools/multiqc/main.nf 2020-07-11 13:25:51 +02:00
Phil Ewels
36c4cfb3b0
Merge pull request #28 from FelixKrueger/trim_galore 
Added functional Trim Galore module
 2020-07-11 13:24:09 +02:00
Phil Ewels
c627da09cc
Merge pull request #27 from FelixKrueger/fastqc 
FastQC module is working and now accepting arguments
 2020-07-11 13:23:41 +02:00
Phil Ewels
05c6d2557d
Merge pull request #24 from FelixKrueger/fastq_screen 
Added FastQ Screen module
 2020-07-11 13:23:03 +02:00
Phil Ewels
89cfc271dd
Merge pull request #22 from Jeremy1805/master 
Added the bwa short alignment (bwa mem) module
 2020-07-11 13:21:34 +02:00
Phil Ewels
8b6065764e Merge branch 'master' into tcoffee_dev 2020-07-11 13:12:17 +02:00
Phil Ewels
dce77ce3f1 Merge branch 'master' of github.com:nf-core/modules 2020-07-11 13:08:33 +02:00
Phil Ewels
21711813c1
Merge pull request #18 from annacprice/shovill 
initial commit of shovill
 2020-07-11 13:00:43 +02:00
Harshil Patel
f422384e4d
Merge pull request #13 from MaxUlysse/dev 
Add social preview image
 2020-07-10 11:34:30 +01:00
FelixKrueger
a2104ca3b9 Added HISAT2 module and test workflow 2020-03-20 11:04:25 +00:00
FelixKrueger
a526551300 Added Bowtie2 module and test workflow 2020-03-19 18:13:15 +00:00
FelixKrueger
974c6168d6 Added short description of MultiQC 2020-03-18 10:06:38 +00:00
FelixKrueger
223077e5a6 MultiQC module and test workflow 2020-03-17 21:46:21 +00:00
FelixKrueger
6208ac9799 Added functional Trim Galore module 2020-03-16 17:49:39 +00:00
Alexander Peltzer
9dee710b04
Merge pull request #25 from piotr-faba-ardigen/add_cutadapt_tool 
Add cutadapt tool
 2020-03-16 18:46:00 +01:00
Harshil Patel
7738dbe4df
Merge pull request #26 from nf-core/readme-update-modules 
Propose module organization
 2020-03-16 14:49:24 +00:00
Harshil Patel
5e71d61f27
Update README.md 2020-03-16 14:47:20 +00:00
Harshil Patel
d553406fa5
Update README.md 2020-03-16 14:47:11 +00:00
Harshil Patel
300e89c4dc
Update README.md 2020-03-16 14:47:03 +00:00
Alexander Peltzer
95d57bcef2
Apply suggestions from code review 
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
 2020-03-16 15:42:52 +01:00
FelixKrueger
f8916eb9b5 FastQC module is working and now accepting arguments 2020-03-16 14:17:38 +00:00
Alexander Peltzer
771e53625b
Update README.md 2020-03-16 14:42:22 +01:00
Alexander Peltzer
05b4bbe8a1
Update README.md 2020-03-16 14:39:27 +01:00
Alexander Peltzer
f091e174c0
Update README.md 2020-03-16 14:37:07 +01:00
Alexander Peltzer
9753e803e0
Update README.md 2020-03-16 14:27:08 +01:00
Alexander Peltzer
4303ec700c
Propose module organization 
See above changes to readme :_)
 2020-03-16 14:06:03 +01:00
FelixKrueger
0ceb45068e FastQ Screen works with E coli paired-end test file 2020-03-10 22:14:25 +00:00
FelixKrueger
d9a3b02b00 Updated yaml description 2020-03-10 14:13:36 +00:00
JoseEspinosa
787bf44c62 Name was fixed to tcoffee instead of FastQC (used as template) 2020-03-06 16:35:02 +01:00
Piotr Faba
6fd86ad9e5 2 tests 2020-03-06 14:56:33 +00:00
Piotr Faba
fa134a1196 fix path error 2020-03-06 14:54:26 +00:00
Piotr Faba
2646e55e2b get test working 2020-03-06 14:50:29 +00:00
Piotr Faba
660be04708 fix test 2020-03-06 14:41:37 +00:00
Piotr Faba
36cad50593 test submodules checkout 2020-03-06 14:38:49 +00:00
Piotr Faba
977a9b3ee8 test fix 2020-03-06 14:34:34 +00:00
Phil Ewels
c8ceddfe77 Tidying, add samtools and trim_galore 2020-03-06 14:33:48 +00:00
Piotr Faba
f33dd2d2e9 add ci test 2020-03-06 14:31:44 +00:00
Piotr Faba
c90474202c update meta 2020-03-06 14:23:32 +00:00
Phil Ewels
198e9a85eb FastQC: add dockerfile and environment.yml 2020-03-06 14:04:18 +00:00
Piotr Faba
1c941ef8d6 Update test-data commit and references 2020-03-06 13:59:14 +00:00
Piotr Faba
490eca706c single and paired end supported 2020-03-06 13:23:12 +00:00
FelixKrueger
a6f7296e22 Initial commit 2020-03-06 13:21:17 +00:00
Phil Ewels
b3cc751e78 Build tool docker images: first attempt 2020-03-06 11:54:09 +00:00