1612 commits

Author	SHA1	Message	Date
Alexander Peltzer	a0747b1405	Remove empty file md5sum	2022-06-10 11:53:28 +02:00
Alexander Peltzer	63f47551a8	Fix empty test having md5sum	2022-06-10 11:52:30 +02:00
Alexander Peltzer	1fbe69cfcc	Updated and fixed tests	2022-06-10 11:46:23 +02:00
Alexander Peltzer	8dfe8b795f	Merge remote-tracking branch 'refs/remotes/origin/cellranger-7.0.0' into cellranger-7.0.0	2022-06-10 11:23:15 +02:00
Alexander Peltzer	4928dfad34	Trying to fix tests	2022-06-10 11:22:45 +02:00
Alexander Peltzer	570a43ba4c	Fix tests	2022-06-10 11:21:03 +02:00
Thiseas C. Lamnidis	9948e9fe21	Merge branch 'master' into sexdeterrmine	2022-06-10 11:03:18 +02:00
Maxime U. Garcia	878a5a8093	Merge branch 'master' into update_spark	2022-06-09 15:49:31 +02:00
Rike	30262d1fdd	remove variable checksum	2022-06-09 15:44:12 +02:00
Rike	a5583143c4	update checksum	2022-06-09 15:38:28 +02:00
Rike	95633c6853	update checksum	2022-06-09 15:30:47 +02:00
Nicolas Vannieuwkerke	c50df9ad04	fix test.yml	2022-06-09 15:14:37 +02:00
Nicolas Vannieuwkerke	81fff7384d	small fix and typo	2022-06-09 15:08:02 +02:00
Nicolas Vannieuwkerke	14d38e43cf	fix test.yml	2022-06-09 14:58:20 +02:00
nvnieuwk	bf73b6d376	Merge branch 'master' into new-module-gatk4/reblockgvcf	2022-06-09 14:57:20 +02:00
Nicolas Vannieuwkerke	fe9e4ece00	new module gatk4/reblockgvcf	2022-06-09 14:56:55 +02:00
nvnieuwk	6d10909e9f	Update tests/modules/ensemblvep/main.nf ... Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>	2022-06-09 11:55:41 +02:00
nvnieuwk	e88a4ff70b	Merge branch 'master' into add-optional-fasta-parameter-to-ensemblvep	2022-06-09 11:54:22 +02:00
Nicolas Vannieuwkerke	e60323b757	typo	2022-06-09 11:53:59 +02:00
Nicolas Vannieuwkerke	7947bc662c	added an extra test without fasta	2022-06-09 11:53:16 +02:00
Nicolas Vannieuwkerke	a3202e41ec	prettier	2022-06-09 11:47:24 +02:00
Nicolas Vannieuwkerke	5ccf6fbcc9	add optional fasta argument to ensemblvep	2022-06-09 11:45:27 +02:00
SusiJo	0204d2374b	Merge remote-tracking branch 'origin/master' into gatk_spark	2022-06-09 09:33:17 +02:00
James Fellows Yates	4d7afa21e2	Add GATK indelrealigner tests	2022-06-08 21:14:08 +02:00
James A. Fellows Yates	1fc0d3de4b	Merge branch 'gatk3-indelrealigner' into upstream-for-indel	2022-06-08 20:30:19 +02:00
James A. Fellows Yates	4a2157e5ab	Merge branch 'master' into gatk-realigntargetcreator	2022-06-08 20:15:02 +02:00
Ramprasad Neethiraj	1d67489056	update test	2022-06-08 16:36:02 +02:00
Ramprasad Neethiraj	0b090a6b6d	Merge branch 'master' of https://github.com/nf-core/modules into rhocall	2022-06-08 16:34:34 +02:00
Ramprasad Neethiraj	3cabdfac20	Merge branch 'master' into update_roh	2022-06-08 15:04:34 +02:00
Ramprasad Neethiraj	c079ee2025	fix test	2022-06-08 14:48:16 +02:00
Matthias De Smet	c005a5e007	formatting	2022-06-08 14:42:58 +02:00
Matthias De Smet	100b3f244c	Apply suggestions from code review ... Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>	2022-06-08 14:24:55 +02:00
Matthias De Smet	71e3056813	Merge branch 'master' into update/multiqc	2022-06-08 14:03:26 +02:00
Matthias De Smet	439d2a9e67	update mqc inputs	2022-06-08 13:48:27 +02:00
Maxime U. Garcia	7230bf2174	Merge branch 'master' into update_tiddit	2022-06-08 11:16:01 +02:00
Ramprasad Neethiraj	16e5e6093c	Merge branch 'master' of https://github.com/nf-core/modules into rhocall	2022-06-07 14:45:09 +02:00
SusiJo	745e47cd33	add versions.yml	2022-06-07 14:38:43 +02:00
Ramprasad Neethiraj	65a0fb959f	rhocall	2022-06-07 14:37:03 +02:00
SusiJo	e78ad2f88b	Merge remote-tracking branch 'origin' into gatk_spark	2022-06-07 14:00:26 +02:00
Matthias De Smet	bffd1c562b	Merge branch 'master' into update/multiqc	2022-06-07 13:59:00 +02:00
SusiJo	dbca9e8b36	adjusted prefix + test + authors	2022-06-07 13:58:57 +02:00
Matthias De Smet	e5bf87aec3	possible fix for name collisions	2022-06-07 13:58:27 +02:00
Ramprasad Neethiraj	9d6697bdea	template	2022-06-07 12:14:40 +02:00
Nicolas Vannieuwkerke	771425e7a0	add threads to calibratedragstrmodel	2022-06-07 12:11:18 +02:00
SusiJo	1368956d88	Merge remote-tracking branch 'origin/master' into gatk_spark	2022-06-07 11:00:33 +02:00
James A. Fellows Yates	d292f822e4	Merge branch 'master' into gatk-realigntargetcreator	2022-06-03 21:33:22 +02:00
James A. Fellows Yates	d2b240a17a	Merge branch 'master' into gatk-unifiedgenotyper	2022-06-03 21:24:09 +02:00
Robert A. Petit III	24ca2ed464	Merge branch 'master' into rp3-add-snippy	2022-06-03 13:01:05 -06:00
MaxUlysse	97e66015ca	add test + fix issues	2022-06-03 15:51:02 +02:00
SusiJo	230224700e	change prefix	2022-06-03 13:20:45 +02:00