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Author	SHA1	Message	Date
Jill V. Hagey, PhD	23cfb5dd42	Update test.yml	2022-05-02 18:38:48 -04:00
Jill V. Hagey, PhD	db9681029c	Update test.yml	2022-05-02 18:27:01 -04:00
Jill V. Hagey, PhD	7b0d6f96fd	Update test.yml	2022-05-02 18:20:54 -04:00
Jill V. Hagey, PhD	e5d7c80bb5	Update test.yml	2022-05-02 18:13:14 -04:00
Moritz E. Beber	16aa3915e3	feat: add module for slimfastq	2022-05-02 23:16:59 +02:00
Carpanzano	d2e1408b0f	updated content for html file in test yml	2022-05-02 18:44:05 +02:00
carpanz	e8b2445878	updated file location in test yml	2022-05-02 18:43:20 +02:00
Carpanzano	1deb789502	synced withName ext.args with process name	2022-05-02 18:39:45 +02:00
Carpanzano	5136ed29c4	removed include and changed process name due to expected folder name before tokenize	2022-05-02 18:38:59 +02:00
Ramprasad Neethiraj	3194729f82	Merge branch 'master' into adding_stub_to_modules	2022-05-02 18:31:55 +02:00
Jill V. Hagey, PhD	99a8711997	Update tests/modules/srst2/srst2/test.yml ... Co-authored-by: Edmund Miller <edmund.a.miller@gmail.com>	2022-05-02 12:26:56 -04:00
JIANHONG OU	5735f515f8	fix a typo in version export.	2022-05-02 12:25:48 -04:00
Carpanzano	32b8f3f612	adding contain for html output in test yml	2022-05-02 18:21:26 +02:00
carpanz	6e83196634	updating test yml after removing kronadb from test	2022-05-02 18:20:36 +02:00
Carpanzano	b0a2d36ec1	removing kronadb module from testing ktimporttaxonomy test - NB: temporarily using test db while testdb is added to test-datasets	2022-05-02 18:16:08 +02:00
Sateesh Peri	c56b371713	Merge branch 'master' into srst2/srst2	2022-05-02 12:13:11 -04:00
Carpanzano	c07ae8c483	fixed lint in ktimporttaxonomy	2022-05-02 17:47:45 +02:00
Simone Carpanzano	3d9c8a6bb1	Merge branch 'master' into firstbranch	2022-05-02 17:43:33 +02:00
Carpanzano	c9ab26ba8e	synced name of report as in test config	2022-05-02 17:41:55 +02:00
Carpanzano	76a0e3ef04	updated config kraken report name	2022-05-02 17:40:50 +02:00
jvhagey	cd45dc1550	linting test.yml	2022-05-02 11:38:39 -04:00
Jasmin F	f70cfbe1d7	Merge pull request #1581 from jasmezz/antismash_db_output ... Antismash db output	2022-05-02 17:37:01 +02:00
jvhagey	24dc2d2113	added tests	2022-05-02 11:30:19 -04:00
Carpanzano	1188264fa2	finished test yml file	2022-05-02 17:25:58 +02:00
carpanz	028dc3cb87	updated test yml file	2022-05-02 17:24:55 +02:00
Carpanzano	3cebcbfc0a	remove taxonomy not used in place of db	2022-05-02 17:13:58 +02:00
Carpanzano	2e4c200a26	remove new line between includes	2022-05-02 17:13:20 +02:00
Jasmin F	235944f797	Merge branch 'master' into antismash_db_output	2022-05-02 17:11:51 +02:00
Jasmin F	8db0b754c0	Fix commented-out command	2022-05-02 16:56:39 +02:00
Carpanzano	700d6ab3f1	errore TDOWNLOAD	2022-05-02 16:55:18 +02:00
jasmezz	6a9f2077cf	Fix unbound variable crash	2022-05-02 16:41:59 +02:00
Carpanzano	80f107515e	update nextflow.config withName	2022-05-02 16:22:22 +02:00
Carpanzano	42310cbce2	updated config to reflect names in test workflow	2022-05-02 16:14:38 +02:00
Carpanzano	38d9d81aaf	update code	2022-05-02 16:10:57 +02:00
Lucpen	50cc136a78	Update tests/modules/gatk4/mutect2/main.nf ... fix spelling mistake Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>	2022-05-02 15:14:05 +02:00
Lucpen	62c6123ec4	fix gatk4_mutect2 test by changing main.nf	2022-05-02 15:11:57 +02:00
JIANHONG OU	250d64dfde	fix the typo of motus_downloadb.	2022-05-02 08:52:54 -04:00
JIANHONG OU	b14f30936e	Merge branch 'nf-core:master' into motus_downloaddb	2022-05-02 08:42:09 -04:00
JIANHONG OU	31dd31079d	update teh versions.yml	2022-05-02 08:41:41 -04:00
jasmezz	0fc352188b	Fix conda antismash path	2022-05-02 14:40:35 +02:00
Jasmin F	5cd517e759	Apply suggestions from code review ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-02 14:31:40 +02:00
Lucpen	dfabf960dc	Merge branch 'master' into adding_stub_to_modules	2022-05-02 14:20:03 +02:00
JIANHONG OU	f1e4591468	Merge branch 'motus_downloaddb' of github.com:jianhong/modules into motus_downloaddb	2022-05-02 08:19:16 -04:00
JIANHONG OU	3f07761da5	remove the output check for the versions.yml.	2022-05-02 08:19:13 -04:00
ljmesi	ed4dd1a928	Add additional handling of fq.gz file name suffix	2022-05-02 14:16:12 +02:00
Lucpen	da82e06354	fix gatk4_mutect2 test	2022-05-02 14:16:07 +02:00
James A. Fellows Yates	92efb83ec8	Merge pull request #1595 from jfy133/diamond-update ... Standardise DIAMOND output channels and md5sum	2022-05-02 13:43:56 +02:00
Lucpen	3a4e415fe2	chores adding dummy files for stubs	2022-05-02 13:30:18 +02:00
James A. Fellows Yates	f1c2f624eb	Update tests/modules/diamond/blastx/main.nf ... Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>	2022-05-02 13:17:22 +02:00
Lucpen	de40c1bf54	chore removing file from test	2022-05-02 13:15:01 +02:00