3245 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
Rike	e8221cf98e	Merge remote-tracking branch 'origin' into gatk_cnnscore	2022-05-18 14:27:25 +02:00
Rike	10840a0562	Conda not suported	2022-05-18 14:26:21 +02:00
James A. Fellows Yates	9f8d6cbdd5	Merge pull request #1616 from jianhong/motus_profile ... Motus profile	2022-05-18 12:26:31 +01:00
James A. Fellows Yates	965fabdd54	Merge branch 'master' into motus_profile	2022-05-18 11:25:48 +01:00
Rike	5ae757121f	Add indices and meta	2022-05-17 23:38:26 +02:00
FriederikeHanssen	fdf1bec20b	Merge branch 'master' into gatk_cnnscore	2022-05-17 23:07:09 +02:00
Rike	05837a011d	Add comment	2022-05-17 23:06:52 +02:00
Rike	15fba1dd7c	add filter variant tranches	2022-05-17 23:01:24 +02:00
Rike	afa0f2a995	update test	2022-05-17 22:53:41 +02:00
Rike	265fd882ca	update test	2022-05-17 19:44:48 +02:00
Rike	5f63904a50	update test	2022-05-17 19:37:18 +02:00
Rike	05611cf27c	update pytest	2022-05-17 19:11:05 +02:00
Rike	e0fcbb428d	Add CNNScoreVariants	2022-05-17 19:09:46 +02:00
Matthias De Smet	856a8712f8	Merge pull request #1667 from matthdsm/biobambam/bammerge	2022-05-17 17:09:06 +02:00
Jose Espinosa-Carrasco	3614c19206	Merge branch 'master' into biobambam/bammerge	2022-05-17 15:07:37 +02:00
Jose Espinosa-Carrasco	fbf20c1e36	Merge pull request #1673 from nvnieuwk/new-module-bedtools/split ... new module: bedtools split	2022-05-17 14:45:07 +02:00
Nicolas Vannieuwkerke	6342f5b099	added bedtools split	2022-05-17 14:24:32 +02:00
Matthias De Smet	f48790a728	replace regex with fixed extensions	2022-05-17 09:54:06 +02:00
Matthias De Smet	94733a85c0	Update modules/biobambam/bammerge/main.nf ... Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>	2022-05-17 09:46:19 +02:00
Matthias De Smet	c5627e0274	fix config	2022-05-17 09:09:19 +02:00
Matthias De Smet	743e95c61b	fix config	2022-05-17 09:01:02 +02:00
Matthias De Smet	d3ddc2221a	Merge branch 'master' into biobambam/bammerge	2022-05-17 08:26:28 +02:00
Matthias De Smet	53c4a2d1cd	Merge pull request #1657 from sysbiocoder/hmtnote ... Hmtnote	2022-05-17 08:21:32 +02:00
Matthias De Smet	6be91ce82d	fix optional output detection	2022-05-17 08:20:47 +02:00
Subazini TK	79c2c529fc	Merge branch 'master' into hmtnote	2022-05-17 08:05:47 +02:00
JIANHONG OU	671bacb6df	Merge branch 'master' into motus_profile	2022-05-16 17:34:49 -04:00
Matthias De Smet	d0db186e84	Merge branch 'master' into biobambam/bammerge	2022-05-16 20:52:48 +02:00
Matthias De Smet	a79b9adeee	address review comments	2022-05-16 20:51:39 +02:00
Gregor Sturm	9036b90eb6	Merge pull request #1178 from veitveit/maxquant ... New module: Maxquant	2022-05-16 19:32:23 +02:00
Subazini TK	00204fa82b	Update main.nf	2022-05-16 15:20:15 +00:00
Subazini TK	252fcb17c4	Update main.nf	2022-05-16 15:20:15 +00:00
Subazini TK	cb21fa0c96	Update main.nf	2022-05-16 15:20:15 +00:00
Subazini TK	cbae48d06d	Update nextflow.config	2022-05-16 15:20:15 +00:00
Subazini TK	541f403963	Update main.nf	2022-05-16 15:20:15 +00:00
Subazini TK	69243db3d7	Update test.yml	2022-05-16 15:20:15 +00:00
Subazini TK	c8c6fdd2e3	Update main.nf	2022-05-16 15:20:15 +00:00
Subazini TK	a0b46d3f03	Update meta.yml	2022-05-16 15:20:15 +00:00
Subazini TK	eaf81f6835	Update meta.yml	2022-05-16 15:20:15 +00:00
Subazini TK	fb66e8ba97	Update test.yml	2022-05-16 15:20:15 +00:00
Subazini TK	f0713f4723	Update test.yml	2022-05-16 15:20:15 +00:00
Subazini TK	1c42c97504	Update meta.yml	2022-05-16 15:20:15 +00:00
Subazini TK	8b4c5742c9	Update main.nf	2022-05-16 15:20:15 +00:00
Subazini TK	2a15bc2ac0	Update main.nf	2022-05-16 15:20:15 +00:00
Subazini TK	78dc1af1e6	Update main.nf	2022-05-16 15:20:15 +00:00
Subazini TK	060d33f2c3	Update test.yml	2022-05-16 15:20:15 +00:00
Subazini TK	df8f1eae69	Update test.yml	2022-05-16 15:20:15 +00:00
sysbiocoder	26f026683b	hmtnote	2022-05-16 15:20:15 +00:00
sysbiocoder	31fc8b560f	hmtnote	2022-05-16 15:20:15 +00:00
sysbiocoder	fe009b738a	modified: tests/config/pytest_modules.yml	2022-05-16 15:20:15 +00:00
Veit Schwämmle	85345e5f61	Merge branch 'master' into maxquant	2022-05-16 16:06:32 +02:00