365 commits

Author	SHA1	Message	Date
Michael L Heuer	c466255f6f	Add bandage image module	2021-02-03 19:31:58 -06:00
drpatelh	673d463208	bowtie - add mulled build info	2021-02-03 11:33:31 +00:00
drpatelh	423144808c	seacr - add build info for mulled container	2021-02-03 11:05:10 +00:00
drpatelh	34e451dd2e	rsem - add build info for mulled container	2021-02-03 11:04:59 +00:00
drpatelh	26e04dd298	rsem - add build info for mulled container	2021-02-03 11:04:51 +00:00
drpatelh	3d1b9371f2	hisat2 - add build info for mulled container	2021-02-03 11:04:35 +00:00
drpatelh	98158064a7	bwa - add build info for mulled container	2021-02-03 11:04:25 +00:00
drpatelh	630b4be938	bowtie2 - add build info for mulled container	2021-02-03 11:04:02 +00:00
drpatelh	415d0265db	Add build to Conda	2021-02-03 11:03:36 +00:00
drpatelh	3ae4c51f42	various - add build to conda definition	2021-02-03 09:20:34 +00:00
drpatelh	c0926b0b6b	various - add build to conda definition	2021-02-03 09:19:46 +00:00
drpatelh	daab19a849	picard - add build to conda definition	2021-02-03 09:18:37 +00:00
drpatelh	773d4d89f2	rseqc - add build to conda definition	2021-02-03 09:18:20 +00:00
drpatelh	383d35bc7d	samtools - add build to conda definition	2021-02-03 09:17:38 +00:00
drpatelh	ce3edcc994	deeptools - add build to conda definition	2021-02-03 09:16:59 +00:00
drpatelh	c089edc670	cutadapt - add build to conda definition	2021-02-03 09:16:33 +00:00
drpatelh	b41c3d63ec	bwa index - add build to conda definition	2021-02-03 09:16:22 +00:00
drpatelh	f913a55d85	bowtie2 build - add build to conda definition	2021-02-03 09:16:10 +00:00
drpatelh	a536c85ec0	bowtie - add build to conda definition	2021-02-03 08:49:18 +00:00
Maxime Garcia	e7474c3d98	Update main.nf ... Use same tag	2021-02-02 12:13:14 +01:00
JoseEspinosa	ddbe8055c2	Adding tests	2021-01-29 19:31:33 +01:00
JoseEspinosa	43f9815621	Adding module bowtie2 align	2021-01-29 19:29:32 +01:00
Harshil Patel	bd59706d51	Merge pull request #118 from heuermh/dsh-bio ... Added dsh-bio filter-bed as dsh_filterbed	2021-01-29 18:15:24 +00:00
Harshil Patel	7ab3217f16	Update software/dsh/filterbed/main.nf	2021-01-29 18:14:13 +00:00
Harshil Patel	cf5e38f48b	Update software/dsh/filterbed/main.nf	2021-01-29 18:14:08 +00:00
Harshil Patel	0fcbc4233c	Merge pull request #126 from JoseEspinosa/samtools_viralrecon ... Samtools viralrecon	2021-01-29 18:12:48 +00:00
Harshil Patel	eb7a3861db	Update software/samtools/mpileup/meta.yml	2021-01-29 18:12:17 +00:00
JoseEspinosa	2f9934c563	Adding bowtie2_build module	2021-01-29 18:57:27 +01:00
JoseEspinosa	13e9f81160	Fixing lint tests	2021-01-29 18:01:58 +01:00
JoseEspinosa	22dcdc692d	Adding samtools_mpileup module	2021-01-29 17:58:42 +01:00
JoseEspinosa	3eedca9bb4	Add samtools_view	2021-01-29 17:18:45 +01:00
kevinmenden	10bb80743a	started adding quast modules	2021-01-29 16:06:14 +01:00
Michael L Heuer	d2723408ad	Apply suggestions from code review ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-01-29 09:01:21 -06:00
kevinmenden	d30994c6ef	Merge branch 'pangolin-module' of https://github.com/KevinMenden/modules into pangolin-module	2021-01-29 12:54:38 +01:00
kevinmenden	44df90a795	Merge branch 'master' of https://github.com/nf-core/modules into pangolin-module	2021-01-29 12:50:24 +01:00
Harshil Patel	5da41ecb26	Merge pull request #122 from KevinMenden/master ... Added tests and meta.yml files for Salmon	2021-01-29 11:49:03 +00:00
Harshil Patel	59e3e8202b	Update software/pangolin/main.nf	2021-01-29 11:43:42 +00:00
Kevin Menden	afaef3c30d	Apply suggestions from code review ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-01-29 12:40:15 +01:00
kevinmenden	a22f430674	updated input description	2021-01-29 12:34:23 +01:00
Kevin Menden	8f2f936cd4	Apply suggestions from code review ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-01-29 12:33:37 +01:00
kevinmenden	69a41cadbc	added pangolin module	2021-01-29 11:03:54 +01:00
kevinmenden	0780155dc4	added cutadapt module and tests	2021-01-29 09:33:45 +01:00
kevinmenden	3750bea2dd	fixed typo	2021-01-26 16:18:46 +01:00
kevinmenden	a3185732ff	added meta.yml files	2021-01-26 16:12:41 +01:00
kevinmenden	84355f674d	added optional output files	2021-01-26 13:31:30 +01:00
Kevin Menden	8e2749beb7	Apply suggestions from code review ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-01-26 12:46:30 +01:00
kevinmenden	272de7c021	Added meta.yml files for align and genomegenerate	2021-01-25 15:14:57 +01:00
kevinmenden	71e0de733c	adapdted star for mutliple output BAMs	2021-01-25 14:09:03 +01:00
kevinmenden	6444af7b36	star module tests	2021-01-25 09:02:03 +01:00
Michael L Heuer	e6547d5b16	Update dsh-bio version to 2.0	2021-01-22 12:12:56 -06:00