JIANHONG OU
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fadb83cf44
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Merge branch 'master' into motus_profile
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2022-05-13 09:30:20 -04:00 |
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Nicolas Vannieuwkerke
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6427eeeca0
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added tmp-dir + alignment correction
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2022-05-13 14:35:22 +02:00 |
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Nicolas Vannieuwkerke
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1c2a991429
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fixed memory warning
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2022-05-13 14:25:53 +02:00 |
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Nicolas Vannieuwkerke
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d1f824ae66
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updated meta.yml
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2022-05-13 14:21:48 +02:00 |
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Nicolas Vannieuwkerke
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4f6264f7c3
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Merge branch 'new-module-gatk4/splitintervals' of github.com:nvnieuwk/modules into new-module-gatk4/splitintervals
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2022-05-13 13:48:35 +02:00 |
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Nicolas Vannieuwkerke
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9d53577282
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linting
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2022-05-13 13:48:33 +02:00 |
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nvnieuwk
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1d4862ba60
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Merge branch 'master' into new-module-gatk4/splitintervals
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2022-05-13 13:47:20 +02:00 |
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Nicolas Vannieuwkerke
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8a17b6dd0e
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added gatk4/splitintervals
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2022-05-13 13:46:34 +02:00 |
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Chris Cheshire
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9f6a1ae4a4
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Merge branch 'master' into bowtie2-test-fix
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2022-05-13 12:05:48 +01:00 |
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Mahesh Binzer-Panchal
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00826dc2e9
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Merge branch 'master' into genomescope2
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2022-05-13 11:28:47 +02:00 |
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Nicolas Vannieuwkerke
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6fa1c8089a
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Added memory allocation to VCFeval
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2022-05-13 10:03:20 +02:00 |
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JIANHONG OU
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6b960f0e75
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fix the typo in motus_profile.
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2022-05-12 09:20:32 -04:00 |
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Chris Cheshire
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90c67794bf
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Added extra tests but error with collection
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2022-05-12 10:01:33 +01:00 |
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JIANHONG OU
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a2dbef3de3
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remove the wrong quotes for motus_profile.
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2022-05-11 17:49:12 -04:00 |
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JIANHONG OU
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aca4b48842
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Merge branch 'motus_profile' of github.com:jianhong/modules into motus_profile
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2022-05-11 14:23:25 -04:00 |
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JIANHONG OU
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ae81311a78
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fix the typo when using getExtension for motus_profile.
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2022-05-11 14:23:09 -04:00 |
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Matthias De Smet
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dcf9c07fc9
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Merge branch 'master' into update/bowtie2-align
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2022-05-11 19:08:23 +02:00 |
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Moritz E. Beber
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b2dbaa9930
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refactor: rename module
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2022-05-11 17:33:45 +02:00 |
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Moritz E. Beber
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23091aabda
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refactor: move files to custom section
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2022-05-11 17:33:45 +02:00 |
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Moritz E. Beber
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e4551a9ab3
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refactor: always output settings
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2022-05-11 17:33:45 +02:00 |
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Moritz E. Beber
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64ff23f3c1
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feat: add module that verifies NCBI settings
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2022-05-11 17:33:45 +02:00 |
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Matthias De Smet
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c8d3de2ad9
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restore samtools cmd to defaults
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2022-05-11 16:17:30 +02:00 |
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Matthias De Smet
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bcd7fe55b1
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Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-05-11 13:59:03 +02:00 |
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Matthias De Smet
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9097abf277
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Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-05-11 13:58:58 +02:00 |
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Matthias De Smet
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971a889e2a
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Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-05-11 13:57:27 +02:00 |
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Matthias De Smet
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b456d8fa0a
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Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-05-11 13:57:19 +02:00 |
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Matthias De Smet
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ff4b297827
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Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-05-11 13:57:11 +02:00 |
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Matthias De Smet
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9dd083fa94
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Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-05-11 13:55:55 +02:00 |
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Matthias De Smet
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dcffd93875
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Merge branch 'master' into update/bowtie2-align
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2022-05-11 13:34:24 +02:00 |
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CMGG ICT Team
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3ae8cbfad7
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bowtie2: remove code duplication
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2022-05-11 13:32:56 +02:00 |
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Moritz E. Beber
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0cdf7767a7
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refactor: require NCBI user settings always
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2022-05-11 13:02:52 +02:00 |
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Moritz E. Beber
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d4f13ebfff
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refactor: create new settings input
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2022-05-11 12:47:54 +02:00 |
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Moritz E. Beber
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5d593bdb45
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docs: correct license and input description
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2022-05-11 12:47:54 +02:00 |
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Mahesh Binzer-Panchal
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00fcdd0cba
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Merge branch 'master' into genomescope2
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2022-05-11 12:42:39 +02:00 |
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Mahesh Binzer-Panchal
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d54cf467f4
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Update outputs and test data set
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2022-05-11 10:42:17 +00:00 |
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Harshil Patel
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7be7f404d5
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Merge branch 'master' into refactor-prefetch
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2022-05-11 11:28:02 +01:00 |
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Mahesh Binzer-Panchal
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0774704038
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Merge branch 'master' into genomescope2
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2022-05-11 11:38:36 +02:00 |
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Praveen Raj S
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237971cd15
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Merge branch 'master' into master
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2022-05-10 14:35:41 +02:00 |
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Nicolas Vannieuwkerke
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fa7c947c35
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Adjusted meta
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2022-05-10 13:33:37 +02:00 |
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Nicolas Vannieuwkerke
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b7134855e4
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Small update on the output channels
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2022-05-10 12:34:52 +02:00 |
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Moritz E. Beber
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1b228835e9
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refactor: require settings input always
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2022-05-10 12:29:42 +02:00 |
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Nicolas Vannieuwkerke
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c18391aa49
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Updated meta.yml
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2022-05-10 12:26:13 +02:00 |
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nvnieuwk
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2eb77bd64e
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Update modules/rtgtools/vcfeval/main.nf
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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2022-05-10 12:22:56 +02:00 |
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nvnieuwk
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29f2d3c284
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Update modules/rtgtools/vcfeval/main.nf
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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2022-05-10 12:22:49 +02:00 |
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Nicolas Vannieuwkerke
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ef4857ec54
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Updated meta.yml
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2022-05-10 12:20:01 +02:00 |
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Moritz E. Beber
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09bfe3c618
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Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-05-10 12:16:57 +02:00 |
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Moritz E. Beber
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b1e134fdd7
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docs: describe new file input
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2022-05-10 12:16:57 +02:00 |
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Moritz E. Beber
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f6936e5270
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refactor: accept settings as input
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2022-05-10 12:16:57 +02:00 |
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Moritz E. Beber
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46a9aabfa3
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chore: improve license description
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2022-05-10 12:16:57 +02:00 |
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Nicolas Vannieuwkerke
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f3d5584ab0
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Linting
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2022-05-10 12:08:23 +02:00 |
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