sofstam
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024b683671
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Update output and usage
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2023-01-17 15:38:56 +01:00 |
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Sofia Stamouli
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244fe5e30d
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Merge branch 'nf-core:dev' into update_output
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2023-01-17 14:47:56 +01:00 |
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James A. Fellows Yates
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0cda0d2c51
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Merge pull request #213 from nf-core/multiqc-update
Updates MultiQC to 1.14 to add support for all our MQC modules!
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2023-01-17 13:37:44 +01:00 |
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James Fellows Yates
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92dff9b453
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Standardise file names using only underscore
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2023-01-17 10:58:30 +01:00 |
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James Fellows Yates
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480248bcfd
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Deactivate all classifer columns from general stats
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2023-01-17 10:33:35 +01:00 |
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James Fellows Yates
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0947e9b8ca
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Fix mOTUs issues
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2023-01-16 15:09:30 +01:00 |
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James Fellows Yates
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c8f6d713a3
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Add tool names to end of prefix files for easier distinguishing in general stats
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2023-01-16 14:49:44 +01:00 |
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James Fellows Yates
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d6fa45b500
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update MultiQC and include latest modules
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2023-01-16 14:39:52 +01:00 |
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Sofia Stamouli
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06575b537d
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Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2023-01-16 12:59:23 +01:00 |
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Sofia Stamouli
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0e3f9f0b9a
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Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2023-01-16 12:59:13 +01:00 |
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sofstam
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9f21181972
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Add documentation for output docs
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2023-01-12 15:47:29 +01:00 |
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Sofia Stamouli
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3b6be07623
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Merge branch 'nf-core:dev' into update_output
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2023-01-11 16:56:18 +01:00 |
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Sofia Stamouli
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33bce738f5
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Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2023-01-11 16:50:06 +01:00 |
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Sofia Stamouli
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a49a907ad1
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Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2023-01-11 16:47:44 +01:00 |
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Sofia Stamouli
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953f9585c9
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Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2023-01-11 16:47:18 +01:00 |
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Sofia Stamouli
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719fc3cf5d
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Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2023-01-11 16:46:30 +01:00 |
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James A. Fellows Yates
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6dcf619518
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Merge pull request #209 from nf-core/module-version-bumps
Update all modules to make templaite compatible
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2022-12-23 23:17:17 +01:00 |
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James Fellows Yates
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e5c6db96c8
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update all modules to make templaite compatible
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2022-12-23 17:23:05 +01:00 |
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James A. Fellows Yates
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75a95d5ed8
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Merge pull request #143 from genomic-medicine-sweden/update_usage
Update usage.md
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2022-12-23 15:14:12 +01:00 |
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James A. Fellows Yates
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acba31a8d6
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Update taxprofiler.nf
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2022-12-23 15:08:01 +01:00 |
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James A. Fellows Yates
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e586747680
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Add missing comma to list
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2022-12-23 15:06:26 +01:00 |
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James A. Fellows Yates
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2de049399d
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Merge pull request #206 from genomic-medicine-sweden/path_params
Add path parameters
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2022-12-23 15:05:59 +01:00 |
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sofstam
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6ebfdcd017
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Add path parameters
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2022-12-23 13:40:22 +01:00 |
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Sofia Stamouli
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59fd676ab3
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Merge pull request #205 from genomic-medicine-sweden/optional_untar
Optional untar on dbs
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2022-12-23 13:14:04 +01:00 |
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Sofia Stamouli
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41c1ae9d1a
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Commit suggestion
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-12-23 12:20:37 +01:00 |
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sofstam
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85906ab1cb
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Optional untar on dbs
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2022-12-23 11:25:57 +01:00 |
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Sofia Stamouli
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ec9c7cfedc
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Prettier
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2022-12-22 11:10:54 +01:00 |
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Sofia Stamouli
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2f291731c1
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Merge branch 'nf-core:dev' into update_usage
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2022-12-22 11:09:50 +01:00 |
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Sofia Stamouli
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1eeb3b337a
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Update usage.md
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2022-12-22 11:07:09 +01:00 |
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Sofia Stamouli
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29978d83b9
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Update centrifuge section
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2022-12-22 11:03:49 +01:00 |
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Sofia Stamouli
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d6e0d404e3
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Update docs/usage.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-12-22 09:18:00 +01:00 |
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Sofia Stamouli
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ba43b0daa4
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Update docs/usage.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-12-21 09:26:38 +01:00 |
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Sofia Stamouli
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35b296e5fd
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Merge pull request #202 from nf-core/nf-core-template-merge-2.7.2
Important! Template update for nf-core/tools v2.7.2
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2022-12-21 09:18:40 +01:00 |
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James A. Fellows Yates
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361700550e
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Merge pull request #203 from nf-core/kraken-uniq-bump
Bump KrakenUniq version
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2022-12-20 21:51:18 +01:00 |
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James A. Fellows Yates
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1279437aa1
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Apply suggestions from code review
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2022-12-20 21:48:08 +01:00 |
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Sofia Stamouli
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18c15f8a78
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Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-12-20 20:23:38 +01:00 |
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Sofia Stamouli
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fb9de1e212
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Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-12-20 20:23:32 +01:00 |
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Sofia Stamouli
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8404c28d08
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Review suggestion
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-12-20 20:23:26 +01:00 |
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Sofia Stamouli
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1706555eff
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Prettier
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2022-12-20 20:10:05 +01:00 |
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James Fellows Yates
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612f532fb2
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Bump KrakenUniq version
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2022-12-20 20:08:12 +01:00 |
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Sofia Stamouli
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24a8da2086
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Fix linting
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2022-12-20 19:59:55 +01:00 |
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Sofia Stamouli
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2e08c873a0
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Apply review suggestion
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-12-20 17:34:19 +01:00 |
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Sofia Stamouli
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0cbd0a8013
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Apply review suggestion
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-12-20 17:33:35 +01:00 |
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Sofia Stamouli
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af7468522a
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Apply review suggestion
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-12-20 17:33:18 +01:00 |
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Sofia Stamouli
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964771c5f2
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Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-12-20 17:33:04 +01:00 |
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Sofia Stamouli
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3c33ba66ca
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Apply review suggestion
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-12-20 17:32:13 +01:00 |
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Sofia Stamouli
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af8fd18d97
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Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-12-20 15:44:35 +01:00 |
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Sofia Stamouli
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b0a6bdee5a
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Apply review suggestion
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-12-20 15:43:45 +01:00 |
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Sofia Stamouli
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c6710db7a9
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Apply review suggestion
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-12-20 15:42:41 +01:00 |
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Sofia Stamouli
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d7c4554b18
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Apply review suggestion
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-12-20 15:42:10 +01:00 |
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