142 commits

Author	SHA1	Message	Date
James A. Fellows Yates	11a8624b39	Add warning about database parameters [skip ci]	2023-02-03 09:42:20 +01:00
James Fellows Yates	932dc12fb1	Add list of expected tools in MultiQC report [skip ci]	2023-01-31 13:09:53 +01:00
James Fellows Yates	52907dcc26	Prettier	2023-01-31 13:07:07 +01:00
James A. Fellows Yates	b4d01ac226	Formatting tweaks	2023-01-31 10:23:36 +01:00
sofstam	366745bdbe	Prettier in usage	2023-01-31 09:38:43 +01:00
sofstam	5b738ad353	Review + prettier	2023-01-31 09:35:40 +01:00
sofstam	0edef9ea57	Review suggestions + prettier	2023-01-30 11:16:18 +01:00
sofstam	bc2876228c	Apply review suggestions	2023-01-25 15:11:43 +01:00
sofstam	4f8ac72e1f	Add description of each tool	2023-01-25 13:25:33 +01:00
Sofia Stamouli	5d12785ca4	Merge branch 'nf-core:dev' into update_output	2023-01-25 09:47:30 +01:00
James A. Fellows Yates	9cf2d8763f	[skip ci] Update docs/usage.md ... Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>	2023-01-24 11:50:58 +01:00
James Fellows Yates	085d9e519c	[skip ci] add comment about recommendation to split SR/LR	2023-01-24 11:39:37 +01:00
Sofia Stamouli	7d4035d4c7	Add new line in the description of custom file	2023-01-19 13:44:10 +01:00
James A. Fellows Yates	36629b3dde	Merge branch 'dev' into post-usage-draft-tweaks	2023-01-19 10:36:59 +01:00
James A. Fellows Yates	6e43695264	Apply suggestions from code review ... Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>	2023-01-19 08:55:23 +01:00
James A. Fellows Yates	6d380fbbff	Apply suggestions from code review ... Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>	2023-01-19 08:49:55 +01:00
Sofia Stamouli	4dcf8c0b02	Prettier	2023-01-17 15:50:10 +01:00
sofstam	024b683671	Update output and usage	2023-01-17 15:38:56 +01:00
James Fellows Yates	33d4a84237	Add explicit sentnece about classification/profiling	2023-01-17 15:23:59 +01:00
nf-core-bot	11400b016c	[automated] Fix linting with Prettier	2023-01-16 14:11:18 +00:00
James A. Fellows Yates	b34a021db7	Specify the difference between classification/profiling	2023-01-16 14:43:46 +01:00
Sofia Stamouli	06575b537d	Update docs/output.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2023-01-16 12:59:23 +01:00
Sofia Stamouli	0e3f9f0b9a	Update docs/output.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2023-01-16 12:59:13 +01:00
sofstam	9f21181972	Add documentation for output docs	2023-01-12 15:47:29 +01:00
Sofia Stamouli	3b6be07623	Merge branch 'nf-core:dev' into update_output	2023-01-11 16:56:18 +01:00
Sofia Stamouli	33bce738f5	Update docs/output.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2023-01-11 16:50:06 +01:00
Sofia Stamouli	a49a907ad1	Update docs/output.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2023-01-11 16:47:44 +01:00
Sofia Stamouli	953f9585c9	Update docs/output.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2023-01-11 16:47:18 +01:00
Sofia Stamouli	719fc3cf5d	Update docs/output.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2023-01-11 16:46:30 +01:00
James Fellows Yates	ab0c62bdc1	Post-release tweaks to usage.md	2022-12-23 16:23:29 +01:00
Sofia Stamouli	ec9c7cfedc	Prettier	2022-12-22 11:10:54 +01:00
Sofia Stamouli	2f291731c1	Merge branch 'nf-core:dev' into update_usage	2022-12-22 11:09:50 +01:00
Sofia Stamouli	1eeb3b337a	Update usage.md	2022-12-22 11:07:09 +01:00
Sofia Stamouli	29978d83b9	Update centrifuge section	2022-12-22 11:03:49 +01:00
Sofia Stamouli	d6e0d404e3	Update docs/usage.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-22 09:18:00 +01:00
Sofia Stamouli	ba43b0daa4	Update docs/usage.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-21 09:26:38 +01:00
Sofia Stamouli	18c15f8a78	Update docs/output.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 20:23:38 +01:00
Sofia Stamouli	fb9de1e212	Update docs/output.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 20:23:32 +01:00
Sofia Stamouli	8404c28d08	Review suggestion ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 20:23:26 +01:00
Sofia Stamouli	2e08c873a0	Apply review suggestion ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 17:34:19 +01:00
Sofia Stamouli	0cbd0a8013	Apply review suggestion ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 17:33:35 +01:00
Sofia Stamouli	af7468522a	Apply review suggestion ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 17:33:18 +01:00
Sofia Stamouli	964771c5f2	Update docs/output.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 17:33:04 +01:00
Sofia Stamouli	3c33ba66ca	Apply review suggestion ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 17:32:13 +01:00
Sofia Stamouli	af8fd18d97	Update docs/output.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 15:44:35 +01:00
Sofia Stamouli	b0a6bdee5a	Apply review suggestion ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 15:43:45 +01:00
Sofia Stamouli	c6710db7a9	Apply review suggestion ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 15:42:41 +01:00
Sofia Stamouli	d7c4554b18	Apply review suggestion ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 15:42:10 +01:00
Sofia Stamouli	3eb6a29fb0	Merge branch 'nf-core:dev' into update_output	2022-12-20 15:30:19 +01:00
Sofia Stamouli	7be3cfc450	Review suggestions	2022-12-20 15:00:17 +01:00